View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19486_high_3 (Length: 562)
Name: NF19486_high_3
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19486_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 390
Target Start/End: Original strand, 42608534 - 42608909
Alignment:
| Q |
16 |
atcaaatgttattcattgccatgattcagagagtgtcattcctaatttcctagtcaaaattaaactactcatactagtatatattactagaaaaaagggt |
115 |
Q |
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| T |
42608534 |
atcaaatgttattcattgccatgattcagagagtgtcattcctaatttcctagtcaaaattaaactactcatactagtatatattactagaaaaaagagt |
42608633 |
T |
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| Q |
116 |
tatcgttcacgtgaacttaactcaattagtaataacattgcattatatatacagatgccga-ggtttaaacttgtacacctcactaagagatgaatttct |
214 |
Q |
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| T |
42608634 |
tatcgttcacgtgaacttaactcaattagtaataacattacattatatatacagatgccaaaggtttaaacttatacacctcattaagagatgaatttct |
42608733 |
T |
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| Q |
215 |
aaccacattttttccaaacaccccttccttttgtttaccttcttttttagggtgggtggtctaatacattatggttgtgaagaactcagaggttgcacac |
314 |
Q |
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| T |
42608734 |
aaccacattttttccaaacaccccttccttttgtttaccttcttttttagggtgggtggtctaatacattatggttgtgaagaactcggaggttgcacac |
42608833 |
T |
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| Q |
315 |
aaagaacatattaatataatataacatcaaatcatacagattgttatcgtagtttaaaatacatgcccaacatcat |
390 |
Q |
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| T |
42608834 |
aaagaacgtattcatataatataacatcaaatcatacagattgttatcgtagtttaaaatacatgcccaacatcat |
42608909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 461 - 545
Target Start/End: Original strand, 42608975 - 42609059
Alignment:
| Q |
461 |
ttacattagagtagcacaatcctagcagataggtagaggaacaccattccactcctttagacaatccaacatgggatcaataaac |
545 |
Q |
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| T |
42608975 |
ttacattagagtagcacaatcctagcagataggtagaggaacaccattccactcctttagacaatccaacatgggatcaataaac |
42609059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 125 - 165
Target Start/End: Complemental strand, 43400984 - 43400944
Alignment:
| Q |
125 |
cgtgaacttaactcaattagtaataacattgcattatatat |
165 |
Q |
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| T |
43400984 |
cgtgaacttaactcaattagtaagagcattgcattatatat |
43400944 |
T |
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