View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19486_high_31 (Length: 309)

Name: NF19486_high_31
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19486_high_31
NF19486_high_31
[»] chr1 (16 HSPs)
chr1 (9-309)||(40686543-40686848)
chr1 (234-286)||(3921659-3921711)
chr1 (234-292)||(14332395-14332452)
chr1 (234-268)||(18946049-18946083)
chr1 (234-296)||(50233383-50233445)
chr1 (229-298)||(24462280-24462349)
chr1 (227-292)||(28170368-28170432)
chr1 (234-286)||(40176595-40176647)
chr1 (223-285)||(7988455-7988517)
chr1 (227-292)||(24176805-24176871)
chr1 (235-264)||(11571599-11571628)
chr1 (163-204)||(32547555-32547596)
chr1 (223-268)||(43966816-43966861)
chr1 (242-286)||(24806937-24806981)
chr1 (235-287)||(40317832-40317884)
chr1 (236-264)||(40747790-40747818)
[»] chr4 (22 HSPs)
chr4 (153-299)||(37496683-37496831)
chr4 (223-271)||(13307884-13307932)
chr4 (223-271)||(44362673-44362721)
chr4 (219-279)||(49887755-49887815)
chr4 (237-271)||(28663499-28663533)
chr4 (234-287)||(43476790-43476844)
chr4 (227-271)||(13117436-13117480)
chr4 (234-289)||(22799908-22799964)
chr4 (234-293)||(43093540-43093599)
chr4 (234-264)||(5654606-5654636)
chr4 (227-269)||(10164862-10164904)
chr4 (234-264)||(10546162-10546192)
chr4 (227-272)||(13484029-13484075)
chr4 (234-264)||(18513256-18513286)
chr4 (225-291)||(20743284-20743350)
chr4 (234-264)||(34589721-34589751)
chr4 (188-264)||(903936-904013)
chr4 (234-271)||(10634997-10635034)
chr4 (177-264)||(30982834-30982923)
chr4 (151-188)||(39619043-39619080)
chr4 (236-264)||(26276026-26276054)
chr4 (223-271)||(35062452-35062499)
[»] scaffold0024 (1 HSPs)
scaffold0024 (223-297)||(18112-18186)
[»] chr6 (21 HSPs)
chr6 (225-297)||(10031551-10031623)
chr6 (227-292)||(6751890-6751954)
chr6 (218-271)||(19369824-19369877)
chr6 (238-303)||(10421710-10421774)
chr6 (227-283)||(5579649-5579705)
chr6 (236-291)||(15443682-15443737)
chr6 (236-271)||(29959182-29959217)
chr6 (218-291)||(22745945-22746017)
chr6 (234-291)||(34868172-34868229)
chr6 (233-271)||(5635902-5635940)
chr6 (234-304)||(8623179-8623249)
chr6 (234-264)||(9024191-9024221)
chr6 (234-264)||(10157998-10158028)
chr6 (234-292)||(13211296-13211354)
chr6 (223-285)||(29670886-29670948)
chr6 (234-271)||(1334668-1334705)
chr6 (234-291)||(4859128-4859185)
chr6 (234-271)||(31430287-31430324)
chr6 (223-271)||(16503682-16503730)
chr6 (237-285)||(17168887-17168935)
chr6 (153-185)||(19369889-19369921)
[»] chr2 (18 HSPs)
chr2 (227-293)||(43586013-43586079)
chr2 (153-214)||(14450710-14450772)
chr2 (223-268)||(24067263-24067308)
chr2 (223-292)||(42665594-42665663)
chr2 (223-291)||(11439782-11439850)
chr2 (227-271)||(13501086-13501130)
chr2 (227-269)||(14450803-14450845)
chr2 (234-264)||(18570986-18571016)
chr2 (227-285)||(44984658-44984716)
chr2 (227-264)||(10535767-10535804)
chr2 (234-271)||(18512157-18512194)
chr2 (234-271)||(26787813-26787850)
chr2 (227-272)||(37211893-37211938)
chr2 (228-264)||(6180874-6180910)
chr2 (225-309)||(12748653-12748737)
chr2 (219-283)||(19613613-19613677)
chr2 (227-271)||(37491863-37491907)
chr2 (236-264)||(40681996-40682024)
[»] chr8 (23 HSPs)
chr8 (227-297)||(24295145-24295215)
chr8 (227-293)||(26915248-26915314)
chr8 (227-304)||(31119066-31119138)
chr8 (223-271)||(27733854-27733902)
chr8 (227-291)||(42874509-42874573)
chr8 (214-271)||(24208701-24208757)
chr8 (235-271)||(6960692-6960728)
chr8 (228-292)||(22600515-22600579)
chr8 (227-271)||(34073986-34074030)
chr8 (236-271)||(1639497-1639532)
chr8 (218-293)||(10497815-10497890)
chr8 (234-264)||(29198494-29198524)
chr8 (238-292)||(34739080-34739134)
chr8 (237-266)||(1591311-1591340)
chr8 (223-264)||(3508066-3508107)
chr8 (225-286)||(9936806-9936867)
chr8 (236-285)||(11246096-11246145)
chr8 (237-290)||(14227210-14227263)
chr8 (236-264)||(10441217-10441245)
chr8 (236-292)||(14943114-14943170)
chr8 (236-264)||(34201063-34201091)
chr8 (154-186)||(35014847-35014879)
chr8 (153-185)||(41686761-41686793)
[»] chr7 (23 HSPs)
chr7 (227-293)||(5937429-5937495)
chr7 (234-272)||(2144554-2144592)
chr7 (218-271)||(1885580-1885633)
chr7 (164-291)||(22801684-22801813)
chr7 (159-259)||(25956464-25956554)
chr7 (218-271)||(48964061-48964114)
chr7 (234-268)||(2143868-2143902)
chr7 (234-287)||(9050148-9050201)
chr7 (233-277)||(6091328-6091372)
chr7 (242-278)||(31377000-31377036)
chr7 (227-271)||(44317294-44317338)
chr7 (234-264)||(38134421-38134451)
chr7 (234-264)||(44172905-44172935)
chr7 (219-264)||(10893347-10893392)
chr7 (232-297)||(29910689-29910754)
chr7 (235-292)||(30516373-30516430)
chr7 (218-291)||(31808508-31808580)
chr7 (234-271)||(35238199-35238236)
chr7 (223-272)||(36196786-36196835)
chr7 (223-264)||(36314631-36314672)
chr7 (236-309)||(42720907-42720980)
chr7 (227-271)||(10702552-10702595)
chr7 (234-266)||(18678160-18678192)
[»] chr5 (20 HSPs)
chr5 (234-292)||(26205775-26205833)
chr5 (229-271)||(30080511-30080553)
chr5 (223-269)||(16207595-16207641)
chr5 (218-292)||(32444752-32444826)
chr5 (234-271)||(42192283-42192320)
chr5 (246-286)||(309150-309190)
chr5 (227-271)||(21319953-21319997)
chr5 (218-286)||(28296320-28296388)
chr5 (234-285)||(11596470-11596521)
chr5 (227-293)||(19167584-19167651)
chr5 (216-271)||(38784813-38784868)
chr5 (234-299)||(14840126-14840189)
chr5 (234-264)||(43208289-43208319)
chr5 (234-291)||(2039864-2039921)
chr5 (153-186)||(9031881-9031914)
chr5 (234-271)||(10010561-10010598)
chr5 (227-264)||(31264452-31264489)
chr5 (227-264)||(41558662-41558699)
chr5 (234-262)||(10009842-10009870)
chr5 (223-291)||(38749567-38749635)
[»] scaffold0314 (1 HSPs)
scaffold0314 (227-277)||(8949-8999)
[»] chr3 (11 HSPs)
chr3 (218-284)||(49179714-49179780)
chr3 (234-271)||(14338498-14338535)
chr3 (218-271)||(15864252-15864305)
chr3 (236-297)||(41319327-41319388)
chr3 (236-292)||(48202286-48202342)
chr3 (153-188)||(34834871-34834906)
chr3 (248-309)||(3180793-3180854)
chr3 (234-271)||(52558143-52558180)
chr3 (232-264)||(21149081-21149113)
chr3 (234-286)||(34409357-34409409)
chr3 (236-264)||(40017386-40017414)
[»] scaffold0504 (2 HSPs)
scaffold0504 (227-271)||(8705-8749)
scaffold0504 (153-198)||(8645-8691)
[»] scaffold0011 (1 HSPs)
scaffold0011 (234-309)||(240036-240111)
[»] scaffold0007 (1 HSPs)
scaffold0007 (227-292)||(225276-225341)


Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 40686543 - 40686848
Alignment:
Q  9 agcagagataaattccataagaattcagaaatctaagtaataaatattatcaatgatgtgattaactaataatgtaaagtatcaaaatggggaaatggag 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40686543 agcagagataaattccataagaattcagaaatctaagtaataaatattttcaatgatgtgattaactaataatgtaaagtatcaaaatggggaaatggag 40686642  T
Q  109 cctgaatatggtgatttaccatttgttgttgttaatttaatttatgttgtacggacacttctgattgaaggcgtgtcccgtgtctgacacatgtcgtgtc 208  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  40686643 cctgaatatggtgatttaccatttgttgttgttaatttaatctatgttgtacggacacttctgattgaaggcgtgttccgtgtctgacacatgtcgtgtc 40686742  T
Q  209 taacacgatacgata-----ccaacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtcatgtccgatgt 303  Q
    |||||||||||||||     || |||||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||    
T  40686743 taacacgatacgatatgataccgacacttatgattacattgaattatatcattttatcaaaattttatcgatgtcgacgtgtcagtgtcatgtccgatgt 40686842  T
Q  304 cggtgt 309  Q
    ||||||    
T  40686843 cggtgt 40686848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 3921711 - 3921659
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtc 286  Q
    ||||||||||||||||||||||||||||||| | |||| ||||| ||||||||    
T  3921711 tgattacattgaattatgtcattttctcaaattattattgatgttgacgtgtc 3921659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 292
Target Start/End: Complemental strand, 14332452 - 14332395
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtc 292  Q
    |||||||||||||||||||||||||||| ||||||||| | ||||||| ||| ||||||    
T  14332452 tgattacattgaattatgtcattttctc-aaattttatcggtgtcgacttgttagtgtc 14332395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 18946049 - 18946083
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattt 268  Q
    |||||||||||||||||||||||||||||||||||    
T  18946049 tgattacattgaattatgtcattttctcaaaattt 18946083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 50233445 - 50233383
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtcatgt 296  Q
    ||||||||||||||||||||||||||| ||||||| || |||||| ||| ||| |||| ||||    
T  50233445 tgattacattgaattatgtcattttcttaaaatttaattgatgtcaacgcgtctgtgttatgt 50233383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 229 - 298
Target Start/End: Original strand, 24462280 - 24462349
Alignment:
Q  229 acttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtcatgtcc 298  Q
    |||| ||||||||||||||||||||||||| ||||||||| ||   ||||||||| || ||||| |||||    
T  24462280 acttgtgattacattgaattatgtcattttttcaaaatttgatcagtgtcgacgtatctgtgtcgtgtcc 24462349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 28170432 - 28170368
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtc 292  Q
    |||||| | ||||||||||||||||||||||| |||||||||||| | |||| ||| |||||||||    
T  28170432 acacttgttattacattgaattatgtcatttt-tcaaaattttattggtgtccacgcgtcagtgtc 28170368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 40176647 - 40176595
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtc 286  Q
    |||||||||||||| | ||||||||||||||||||||| | ||| ||||||||    
T  40176647 tgattacattgaatgaagtcattttctcaaaattttatcggtgttgacgtgtc 40176595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 285
Target Start/End: Original strand, 7988455 - 7988517
Alignment:
Q  223 accaacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgt 285  Q
    |||||||||| ||||||||||||||||||||| ||||| ||| | ||||   |||||||||||    
T  7988455 accaacacttatgattacattgaattatgtcactttcttaaattattatcagtgtcgacgtgt 7988517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 24176871 - 24176805
Alignment:
Q  227 acacttttgattacattgaattatgtcatttt-ctcaaaattttatggatgtcgacgtgtcagtgtc 292  Q
    |||||| |||||||||| ||| |||||||||| ||||||||||||| | ||| ||||||||| ||||    
T  24176871 acacttgtgattacattaaatcatgtcatttttctcaaaattttatcggtgttgacgtgtcaatgtc 24176805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 264
Target Start/End: Complemental strand, 11571628 - 11571599
Alignment:
Q  235 gattacattgaattatgtcattttctcaaa 264  Q
    ||||||||||||||||||||||||||||||    
T  11571628 gattacattgaattatgtcattttctcaaa 11571599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 204
Target Start/End: Original strand, 32547555 - 32547596
Alignment:
Q  163 acacttctgattgaaggcgtgtcccgtgtctgacacatgtcg 204  Q
    ||||||| |||| ||||||||||| |||||||||||||||||    
T  32547555 acacttcagattaaaggcgtgtccggtgtctgacacatgtcg 32547596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 43966861 - 43966816
Alignment:
Q  223 accaacacttttgattacattgaattatgtcattttctcaaaattt 268  Q
    |||||||| | ||||||||||||||| | |||||||||||||||||    
T  43966861 accaacacatgtgattacattgaattgtatcattttctcaaaattt 43966816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 286
Target Start/End: Complemental strand, 24806981 - 24806937
Alignment:
Q  242 ttgaattatgtcattttctcaaaattttatggatgtcgacgtgtc 286  Q
    ||||||||||| ||||||||||||||||||  |||| ||||||||    
T  24806981 ttgaattatgttattttctcaaaattttatccatgttgacgtgtc 24806937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 235 - 287
Target Start/End: Original strand, 40317832 - 40317884
Alignment:
Q  235 gattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtca 287  Q
    ||||| ||||||||||| ||||||||||||||||||  |||||| || |||||    
T  40317832 gattatattgaattatgccattttctcaaaattttaccgatgtccacatgtca 40317884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 264
Target Start/End: Original strand, 40747790 - 40747818
Alignment:
Q  236 attacattgaattatgtcattttctcaaa 264  Q
    |||||||||||||||||||||||||||||    
T  40747790 attacattgaattatgtcattttctcaaa 40747818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 8e-24; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 153 - 299
Target Start/End: Complemental strand, 37496831 - 37496683
Alignment:
Q  153 tgttgtacggacacttctgattgaaggcgtgtcccg-tgtctgacacatgtcgtgtctaaca-cgatacgataccaacacttttgattacattgaattat 250  Q
    ||||| |||||||||| ||||||||||||||||||| |||| ||||  |||||||||   || ||| || | ||| |||||| |||||||||||||||||    
T  37496831 tgttgcacggacacttatgattgaaggcgtgtcccggtgtccgacatgtgtcgtgtccggcaacgacacaacaccgacacttgtgattacattgaattat 37496732  T
Q  251 gtcattttctcaaaattttatggatgtcgacgtgtcagtgtcatgtccg 299  Q
    |||||||||||||||  |||| | |||| ||||||||||||| ||||||    
T  37496731 gtcattttctcaaaaaattatcggtgtcaacgtgtcagtgtcgtgtccg 37496683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 13307932 - 13307884
Alignment:
Q  223 accaacacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  13307932 accaacacttgtgattacattgaattatgtcattttctcaaaattttat 13307884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 44362721 - 44362673
Alignment:
Q  223 accaacacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||||||||| |||||||||| |||||||||||||||||||||||||||    
T  44362721 accaacacttgtgattacattaaattatgtcattttctcaaaattttat 44362673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 49887815 - 49887755
Alignment:
Q  219 cgataccaacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcg 279  Q
    ||||||||| | |||| ||||||||||||||||||||||  |||||||||||| |||||||    
T  49887815 cgataccaatatttttaattacattgaattatgtcatttcttcaaaattttatcgatgtcg 49887755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 237 - 271
Target Start/End: Complemental strand, 28663533 - 28663499
Alignment:
Q  237 ttacattgaattatgtcattttctcaaaattttat 271  Q
    |||||||||||||||||||||||||||||||||||    
T  28663533 ttacattgaattatgtcattttctcaaaattttat 28663499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 43476844 - 43476790
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaatt-ttatggatgtcgacgtgtca 287  Q
    |||||||||| |||||||||||| |||||||||| |||| |||||||||||||||    
T  43476844 tgattacattaaattatgtcattctctcaaaattattattgatgtcgacgtgtca 43476790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 13117480 - 13117436
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||||| ||||||||||||||| |||||||||||| |||||||||    
T  13117480 acacttgtgattacattgaattttgtcattttctccaaattttat 13117436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 289
Target Start/End: Original strand, 22799908 - 22799964
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaatt-ttatggatgtcgacgtgtcagt 289  Q
    ||||||||||||||||||||||||||| |||||| || | | |||||||||||||||    
T  22799908 tgattacattgaattatgtcattttctaaaaattattcttgttgtcgacgtgtcagt 22799964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 293
Target Start/End: Original strand, 43093540 - 43093599
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtca 293  Q
    |||||||||| ||||||| |||||| ||||| | |||||| ||| |||||||||||||||    
T  43093540 tgattacattcaattatgccattttttcaaattattatgggtgttgacgtgtcagtgtca 43093599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Original strand, 5654606 - 5654636
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaa 264  Q
    |||||||||||||||||||||||||||||||    
T  5654606 tgattacattgaattatgtcattttctcaaa 5654636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 10164862 - 10164904
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaatttt 269  Q
    |||||| ||||||||||||||||||||||||| |||| |||||    
T  10164862 acacttgtgattacattgaattatgtcattttttcaagatttt 10164904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Complemental strand, 10546192 - 10546162
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaa 264  Q
    |||||||||||||||||||||||||||||||    
T  10546192 tgattacattgaattatgtcattttctcaaa 10546162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 13484075 - 13484029
Alignment:
Q  227 acacttttgattacatt-gaattatgtcattttctcaaaattttatg 272  Q
    |||||| |||||||||| ||||||||| |||||||||||||||||||    
T  13484075 acacttgtgattacatttgaattatgttattttctcaaaattttatg 13484029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Original strand, 18513256 - 18513286
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaa 264  Q
    |||||||||||||||||||||||||||||||    
T  18513256 tgattacattgaattatgtcattttctcaaa 18513286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 20743284 - 20743350
Alignment:
Q  225 caacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgt 291  Q
    |||||| | |||||||| |||||||||||||||||||||| | ||||   ||||| |||||||||||    
T  20743284 caacacctatgattacactgaattatgtcattttctcaaattattatccgtgtcggcgtgtcagtgt 20743350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Original strand, 34589721 - 34589751
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaa 264  Q
    |||||||||||||||||||||||||||||||    
T  34589721 tgattacattgaattatgtcattttctcaaa 34589751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 264
Target Start/End: Complemental strand, 904013 - 903936
Alignment:
Q  188 gtgtctgacacatgtcgtgtctaacac-gatacgataccaacacttttgattacattgaattatgtcattttctcaaa 264  Q
    ||||| ||||||||||||||| ||||| ||||||||||  | || | | |||||| |||||||||| |||||||||||    
T  904013 gtgtcggacacatgtcgtgtccaacaccgatacgatactgatacatataattacactgaattatgtgattttctcaaa 903936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 10635034 - 10634997
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||| |||||||||||||||||||| ||||||||||||    
T  10635034 tgataacattgaattatgtcattttttcaaaattttat 10634997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 264
Target Start/End: Original strand, 30982834 - 30982923
Alignment:
Q  177 aggcgtgtcccg-tgtctgacacatgtcgtgtctaacac-gatacgataccaacacttttgattacattgaattatgtcattttctcaaa 264  Q
    |||||||||||| |||| ||||| |||||||||| |||| || |||| ||| |||||| | |||||| |||| ||||| |||||||||||    
T  30982834 aggcgtgtcccggtgtcggacacgtgtcgtgtctgacaccgacacgacaccgacacttataattacactgaaatatgtgattttctcaaa 30982923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 39619043 - 39619080
Alignment:
Q  151 tatgttgtacggacacttctgattgaaggcgtgtcccg 188  Q
    ||||||| ||||||||||||||||||||| ||||||||    
T  39619043 tatgttgcacggacacttctgattgaaggtgtgtcccg 39619080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 264
Target Start/End: Original strand, 26276026 - 26276054
Alignment:
Q  236 attacattgaattatgtcattttctcaaa 264  Q
    |||||||||||||||||||||||||||||    
T  26276026 attacattgaattatgtcattttctcaaa 26276054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 35062499 - 35062452
Alignment:
Q  223 accaacacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||||||||| ||||||||||||||||| | ||||| ||||||||||||    
T  35062499 accaacacttatgattacattgaattatattatttt-tcaaaattttat 35062452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 18112 - 18186
Alignment:
Q  223 accaacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtcatgtc 297  Q
    ||||||||||  |||||||||||||||||| |||||||||||||||||| | |||||||||||||||||| ||||    
T  18112 accaacacttgcgattacattgaattatgttattttctcaaaattttatcggtgtcgacgtgtcagtgtcgtgtc 18186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 225 - 297
Target Start/End: Complemental strand, 10031623 - 10031551
Alignment:
Q  225 caacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtcatgtc 297  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| | |||| ||||||  ||||||||||    
T  10031623 caacacttgtgattacattgaattatgtcattttctcaaaattttatcggtgtcaacgtgtttgtgtcatgtc 10031551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 6751890 - 6751954
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtc 292  Q
    |||||| |||||||||||||||||||||||||||||||||||||| || || | ||||||||||||    
T  6751890 acacttgtgattacattgaattatgtcattttctcaaaattttatcgacgt-gtcgtgtcagtgtc 6751954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 19369877 - 19369824
Alignment:
Q  218 acgataccaacacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||| ||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  19369877 acgacaccgacacttgtgattacattgaattatgtcattttctcaaaattttat 19369824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 238 - 303
Target Start/End: Complemental strand, 10421774 - 10421710
Alignment:
Q  238 tacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtcatgtccgatgt 303  Q
    |||||| |||||||||||||||| |||||  ||||| |||||||||||||||||| ||||||||||    
T  10421774 tacattcaattatgtcattttcttaaaatactatgg-tgtcgacgtgtcagtgtcgtgtccgatgt 10421710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 283
Target Start/End: Complemental strand, 5579705 - 5579649
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgt 283  Q
    |||||| ||| ||||||||| |||||||||||||||||||||||| | |||||||||    
T  5579705 acacttgtgactacattgaactatgtcattttctcaaaattttatcggtgtcgacgt 5579649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 291
Target Start/End: Complemental strand, 15443737 - 15443682
Alignment:
Q  236 attacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgt 291  Q
    |||| |||||||||||| ||||||||||| | |||| |||||||||||||||||||    
T  15443737 attatattgaattatgttattttctcaaattattattgatgtcgacgtgtcagtgt 15443682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 29959217 - 29959182
Alignment:
Q  236 attacattgaattatgtcattttctcaaaattttat 271  Q
    ||||||||||||||||||||||||||||||||||||    
T  29959217 attacattgaattatgtcattttctcaaaattttat 29959182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 291
Target Start/End: Complemental strand, 22746017 - 22745945
Alignment:
Q  218 acgataccaacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgt 291  Q
    |||| ||| |||||| ||||||||||||| |||  ||||||||||||||||||| | |||||| ||||||||||    
T  22746017 acgacaccgacacttgtgattacattgaaatataacattttctcaaaattttatcg-tgtcgatgtgtcagtgt 22745945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 34868172 - 34868229
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgt 291  Q
    ||||||||||||||||||  ||| |||||||||||||| | ||||||||||| |||||    
T  34868172 tgattacattgaattatgatattctctcaaaattttatcggtgtcgacgtgttagtgt 34868229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 271
Target Start/End: Original strand, 5635902 - 5635940
Alignment:
Q  233 ttgattacattgaattatgtcattttctcaaaattttat 271  Q
    ||||||| |||||||||||||||||||| ||||||||||    
T  5635902 ttgattatattgaattatgtcattttcttaaaattttat 5635940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 304
Target Start/End: Complemental strand, 8623249 - 8623179
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtcatgtccgatgtc 304  Q
    |||||||||| ||| |||||||||||| ||| | |||| | |||| ||||||||||||| |||||| ||||    
T  8623249 tgattacattcaatgatgtcattttctaaaattgttatcggtgtcaacgtgtcagtgtcgtgtccggtgtc 8623179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Original strand, 9024191 - 9024221
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaa 264  Q
    |||||||||||||||||||||||||||||||    
T  9024191 tgattacattgaattatgtcattttctcaaa 9024221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Complemental strand, 10158028 - 10157998
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaa 264  Q
    |||||||||||||||||||||||||||||||    
T  10158028 tgattacattgaattatgtcattttctcaaa 10157998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 13211296 - 13211354
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtc 292  Q
    |||||| ||| |||||||||||||||||||| | ||||  ||||||||||||| |||||    
T  13211296 tgattatattaaattatgtcattttctcaaattattatcaatgtcgacgtgtcggtgtc 13211354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 285
Target Start/End: Complemental strand, 29670948 - 29670886
Alignment:
Q  223 accaacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgt 285  Q
    |||||||| | || ||||||||||| |||||||||||||||| | | |||||| |||||||||    
T  29670948 accaacacatgtggttacattgaatcatgtcattttctcaaattatgatggatatcgacgtgt 29670886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 1334705 - 1334668
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||||||||||||||||||| |||| ||||||||||||    
T  1334705 tgattacattgaattatgtccttttttcaaaattttat 1334668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 4859128 - 4859185
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgt 291  Q
    ||||||||||| ||||||||||||||||||| | |||| | ||||||| ||| |||||    
T  4859128 tgattacattggattatgtcattttctcaaattattattggtgtcgacatgttagtgt 4859185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 31430324 - 31430287
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||||||||| ||| |||||||||||||||||||||||    
T  31430324 tgattacatttaatcatgtcattttctcaaaattttat 31430287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 16503730 - 16503682
Alignment:
Q  223 accaacacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||||||||  ||||||||||||||||| |  |||||||||||||||||    
T  16503730 accaacactagtgattacattgaattatatagttttctcaaaattttat 16503682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 17168935 - 17168887
Alignment:
Q  237 ttacattgaattatgtcattttctcaaaattttatggatgtcgacgtgt 285  Q
    |||||||||||||||||||||| ||||| | ||||  ||||||||||||    
T  17168935 ttacattgaattatgtcattttttcaaattattatcaatgtcgacgtgt 17168887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 19369921 - 19369889
Alignment:
Q  153 tgttgtacggacacttctgattgaaggcgtgtc 185  Q
    ||||| |||||||||||||||||||||||||||    
T  19369921 tgttgcacggacacttctgattgaaggcgtgtc 19369889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 43586013 - 43586079
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtca 293  Q
    |||||| ||||||||||||||||||||||||||||||||||||||   ||| |||||||||||||||    
T  43586013 acacttgtgattacattgaattatgtcattttctcaaaattttatctgtgttgacgtgtcagtgtca 43586079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 214
Target Start/End: Original strand, 14450710 - 14450772
Alignment:
Q  153 tgttgtacggacacttctgattgaaggcgtgtccc-gtgtctgacacatgtcgtgtctaacac 214  Q
    ||||| |||||||||||||||||||| |||||||| |||||||||||||||| ||||| ||||    
T  14450710 tgttgcacggacacttctgattgaagacgtgtcccggtgtctgacacatgtcctgtctgacac 14450772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 268
Target Start/End: Complemental strand, 24067308 - 24067263
Alignment:
Q  223 accaacacttttgattacattgaattatgtcattttctcaaaattt 268  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||    
T  24067308 accaacacttgtgattacattgaattatgtcattttcacaaaattt 24067263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 223 - 292
Target Start/End: Complemental strand, 42665663 - 42665594
Alignment:
Q  223 accaacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtc 292  Q
    |||||||| | |||||||||||||| ||||||| || |||||||||||| ||| ||||||||||| ||||    
T  42665663 accaacacatgtgattacattgaatcatgtcatcttttcaaaattttatcgatatcgacgtgtcaatgtc 42665594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 223 - 291
Target Start/End: Complemental strand, 11439850 - 11439782
Alignment:
Q  223 accaacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgt 291  Q
    ||||| |||| |||||||| |||||||||| ||||||||| |||||||| ||| | |||||||||||||    
T  11439850 accaatacttgtgattacactgaattatgttattttctcataattttatcgattttgacgtgtcagtgt 11439782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 13501086 - 13501130
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||||| ||||||||||||||||||||||||||| ||||||||||    
T  13501086 acacttgtgattacattgaattatgtcattttcttaaaattttat 13501130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 14450803 - 14450845
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaatttt 269  Q
    |||||| ||||||||||||||||||| ||||||||||||||||    
T  14450803 acacttgtgattacattgaattatgtgattttctcaaaatttt 14450845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Complemental strand, 18571016 - 18570986
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaa 264  Q
    |||||||||||||||||||||||||||||||    
T  18571016 tgattacattgaattatgtcattttctcaaa 18570986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 285
Target Start/End: Original strand, 44984658 - 44984716
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgt 285  Q
    |||||| |||| |||||||||||| ||||||| ||||||||| || | |||||||||||    
T  44984658 acacttgtgatcacattgaattatatcattttttcaaaatttgataggtgtcgacgtgt 44984716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 264
Target Start/End: Original strand, 10535767 - 10535804
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaa 264  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  10535767 acacttatgattacactgaattatgtcattttctcaaa 10535804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 18512157 - 18512194
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttat 271  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  18512157 tgattacattgaattatattattttctcaaaattttat 18512194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 26787813 - 26787850
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttat 271  Q
    ||||||||| ||||||||||||||||||||| ||||||    
T  26787813 tgattacatcgaattatgtcattttctcaaatttttat 26787850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 272
Target Start/End: Original strand, 37211893 - 37211938
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttatg 272  Q
    |||||| | ||||||||||||| |||||||||||| ||||||||||    
T  37211893 acacttgtaattacattgaattgtgtcattttctcgaaattttatg 37211938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 264
Target Start/End: Original strand, 6180874 - 6180910
Alignment:
Q  228 cacttttgattacattgaattatgtcattttctcaaa 264  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  6180874 cacttatgattacattgaatcatgtcattttctcaaa 6180910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 225 - 309
Target Start/End: Complemental strand, 12748737 - 12748653
Alignment:
Q  225 caacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtcatgtccgatgtcggtgt 309  Q
    |||||| | |||||||| |||| ||||||||||||||||| | ||||  |||||  |||||| ||||| |||||| |||| ||||    
T  12748737 caacacctatgattacactgaactatgtcattttctcaaattattatccatgtcagcgtgtccgtgtcgtgtccggtgtctgtgt 12748653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 219 - 283
Target Start/End: Original strand, 19613613 - 19613677
Alignment:
Q  219 cgataccaacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgt 283  Q
    |||||| ||||| | | ||||||||||||||||| ||||||||||| | |||||  |||||||||    
T  19613613 cgatactaacacatatcattacattgaattatgttattttctcaaattattatgagtgtcgacgt 19613677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 37491863 - 37491907
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||| ||| |||||||||||||| || ||||||||||||||||||    
T  37491863 acacatttaattacattgaattaagttattttctcaaaattttat 37491907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 264
Target Start/End: Complemental strand, 40682024 - 40681996
Alignment:
Q  236 attacattgaattatgtcattttctcaaa 264  Q
    |||||||||||||||||||||||||||||    
T  40682024 attacattgaattatgtcattttctcaaa 40681996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 297
Target Start/End: Original strand, 24295145 - 24295215
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtcatgtc 297  Q
    |||||| |||||||||| |||| ||||||||||||| |||||||| ||||||||| |||||||||| ||||    
T  24295145 acacttgtgattacattaaattgtgtcattttctcacaattttatcgatgtcgacatgtcagtgtcgtgtc 24295215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 26915248 - 26915314
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtca 293  Q
    |||||| |||||||||| |||||||||||||||||||||||||||   |||||||||||| ||||||    
T  26915248 acacttgtgattacattaaattatgtcattttctcaaaattttatccgtgtcgacgtgtccgtgtca 26915314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 227 - 304
Target Start/End: Complemental strand, 31119138 - 31119066
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtcatgtccgatgtc 304  Q
    |||||| |||||||||||||||||||||||||||||||||||     |||| || |||||||||||||||||| ||||    
T  31119138 acacttgtgattacattgaattatgtcattttctcaaaattt-----atgtagatgtgtcagtgtcatgtccggtgtc 31119066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 223 - 271
Target Start/End: Complemental strand, 27733902 - 27733854
Alignment:
Q  223 accaacacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  27733902 accaacacttgtgattacattgaattatatcattttctcaaaattttat 27733854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 42874573 - 42874509
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgt 291  Q
    |||||| ||||||||||||||||||||||||||||||||| |||  | |||||||||||| ||||    
T  42874573 acacttgtgattacattgaattatgtcattttctcaaaatgttaacggtgtcgacgtgtccgtgt 42874509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 271
Target Start/End: Original strand, 24208701 - 24208757
Alignment:
Q  214 cgatacgataccaacacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    ||||||||||||||||||  ||||| ||||||| ||||||||||||| ||||||||||    
T  24208701 cgatacgataccaacactagtgatt-cattgaaatatgtcattttcttaaaattttat 24208757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 6960692 - 6960728
Alignment:
Q  235 gattacattgaattatgtcattttctcaaaattttat 271  Q
    ||||||||| |||||||||||||||||||||||||||    
T  6960692 gattacattaaattatgtcattttctcaaaattttat 6960728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 228 - 292
Target Start/End: Complemental strand, 22600579 - 22600515
Alignment:
Q  228 cacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtc 292  Q
    ||||| |||||| ||||||||||||||||||||  ||||||||| | ||| || |||||||||||    
T  22600579 cacttgtgattatattgaattatgtcattttctttaaattttattggtgttgatgtgtcagtgtc 22600515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 34073986 - 34074030
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||||| |||||||||| |||||||||||||| ||||||||||||    
T  34073986 acacttatgattacattaaattatgtcattttttcaaaattttat 34074030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 236 - 271
Target Start/End: Complemental strand, 1639532 - 1639497
Alignment:
Q  236 attacattgaattatgtcattttctcaaaattttat 271  Q
    ||||||||||||||||||||||||||||||| ||||    
T  1639532 attacattgaattatgtcattttctcaaaatattat 1639497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 218 - 293
Target Start/End: Original strand, 10497815 - 10497890
Alignment:
Q  218 acgataccaacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtca 293  Q
    |||||||  |||||| |||||||||  |||||||| ||||||||||||||||||   ||||| |||||| ||||||    
T  10497815 acgatactgacacttgtgattacatcaaattatgttattttctcaaaattttatccgtgtcggcgtgtctgtgtca 10497890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Original strand, 29198494 - 29198524
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaa 264  Q
    |||||||||||||||||||||||||||||||    
T  29198494 tgattacattgaattatgtcattttctcaaa 29198524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 238 - 292
Target Start/End: Original strand, 34739080 - 34739134
Alignment:
Q  238 tacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtc 292  Q
    ||||||||||||||||||||||||| | | |||| |||||| ||||||| |||||    
T  34739080 tacattgaattatgtcattttctcatattattatcgatgtcaacgtgtcggtgtc 34739134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 266
Target Start/End: Complemental strand, 1591340 - 1591311
Alignment:
Q  237 ttacattgaattatgtcattttctcaaaat 266  Q
    ||||||||||||||||||||||||||||||    
T  1591340 ttacattgaattatgtcattttctcaaaat 1591311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Complemental strand, 3508107 - 3508066
Alignment:
Q  223 accaacacttttgattacattgaattatgtcattttctcaaa 264  Q
    |||||||| | ||||||||||||||||||| |||||||||||    
T  3508107 accaacacatatgattacattgaattatgttattttctcaaa 3508066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 286
Target Start/End: Complemental strand, 9936867 - 9936806
Alignment:
Q  225 caacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtc 286  Q
    |||||| | |||||| |||||||||| ||||||||| ||| | |||| ||||||||||||||    
T  9936867 caacacatatgattatattgaattatatcattttcttaaattattatcgatgtcgacgtgtc 9936806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 285
Target Start/End: Original strand, 11246096 - 11246145
Alignment:
Q  236 attacattgaattatgtcattttctcaaaattttatggatgtcgacgtgt 285  Q
    ||||||||| ||||||| |||||||||||||||||| |||| | ||||||    
T  11246096 attacattgcattatgttattttctcaaaattttatcgatgccaacgtgt 11246145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 290
Target Start/End: Complemental strand, 14227263 - 14227210
Alignment:
Q  237 ttacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtg 290  Q
    |||||||||||||||| ||||||||||| | |||| | ||| ||||||||||||    
T  14227263 ttacattgaattatgttattttctcaaattattattggtgttgacgtgtcagtg 14227210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 264
Target Start/End: Complemental strand, 10441245 - 10441217
Alignment:
Q  236 attacattgaattatgtcattttctcaaa 264  Q
    |||||||||||||||||||||||||||||    
T  10441245 attacattgaattatgtcattttctcaaa 10441217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 14943114 - 14943170
Alignment:
Q  236 attacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtc 292  Q
    |||||| ||||| | ||||||||||||||||||||| | |||| | |||||||||||    
T  14943114 attacactgaatcaagtcattttctcaaaattttattggtgtcaatgtgtcagtgtc 14943170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 264
Target Start/End: Original strand, 34201063 - 34201091
Alignment:
Q  236 attacattgaattatgtcattttctcaaa 264  Q
    |||||||||||||||||||||||||||||    
T  34201063 attacattgaattatgtcattttctcaaa 34201091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 154 - 186
Target Start/End: Complemental strand, 35014879 - 35014847
Alignment:
Q  154 gttgtacggacacttctgattgaaggcgtgtcc 186  Q
    ||||||| |||||||||||||||||||||||||    
T  35014879 gttgtaccgacacttctgattgaaggcgtgtcc 35014847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 153 - 185
Target Start/End: Original strand, 41686761 - 41686793
Alignment:
Q  153 tgttgtacggacacttctgattgaaggcgtgtc 185  Q
    ||||||| |||||||||||||||||||||||||    
T  41686761 tgttgtatggacacttctgattgaaggcgtgtc 41686793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 5937429 - 5937495
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtca 293  Q
    |||||| ||||||||||||||||||||||||||||||||||||||   ||| |||||||| ||||||    
T  5937429 acacttgtgattacattgaattatgtcattttctcaaaattttatccgtgttgacgtgtctgtgtca 5937495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 234 - 272
Target Start/End: Original strand, 2144554 - 2144592
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttatg 272  Q
    |||||||||||||||||||||||||||||||||||||||    
T  2144554 tgattacattgaattatgtcattttctcaaaattttatg 2144592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 1885633 - 1885580
Alignment:
Q  218 acgataccaacacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||| ||| |||||| ||||||||||||||||||||||||| ||||||||||||    
T  1885633 acgacaccgacacttgtgattacattgaattatgtcattttttcaaaattttat 1885580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 291
Target Start/End: Original strand, 22801684 - 22801813
Alignment:
Q  164 cacttctgattgaaggcgtgtccc-gtgtctgacacatgtcgtgtctaacac-gatacgataccaacacttttgattacattgaattatgtcattttctc 261  Q
    |||||||||||||||||||||||| ||||| ||||  ||| |||||  |||| || |  | ||| |||||| |||||||| |||||||||||||| ||||    
T  22801684 cacttctgattgaaggcgtgtcccagtgtccgacaagtgtggtgtcagacactgacaatacaccgacacttgtgattacagtgaattatgtcattatctc 22801783  T
Q  262 aaaattttatggatgtcgacgtgtcagtgt 291  Q
    ||||||| || | ||| |||||||| ||||    
T  22801784 aaaatttgatcggtgttgacgtgtccgtgt 22801813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 159 - 259
Target Start/End: Complemental strand, 25956554 - 25956464
Alignment:
Q  159 acggacacttctgattgaaggcgtgtcccgtgtctgacacatgtcgtgtctaacacgatacgataccaacacttttgattacattgaattatgtcatttt 258  Q
    |||||||||||||||||||||||||||||||||| ||||  | |||||||          ||| ||| |||||| |||||||||||||||||||||||||    
T  25956554 acggacacttctgattgaaggcgtgtcccgtgtccgacatgtatcgtgtc----------cgacaccgacacttgtgattacattgaattatgtcatttt 25956465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 218 - 271
Target Start/End: Original strand, 48964061 - 48964114
Alignment:
Q  218 acgataccaacacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||| |||||||||| |||||| |||||||||||||||||||||| ||||||||    
T  48964061 acgacaccaacacttgtgattaaattgaattatgtcattttctcacaattttat 48964114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 268
Target Start/End: Original strand, 2143868 - 2143902
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattt 268  Q
    |||||||||||||||||||||||||||||||||||    
T  2143868 tgattacattgaattatgtcattttctcaaaattt 2143902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 287
Target Start/End: Original strand, 9050148 - 9050201
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtca 287  Q
    |||||| |||||| ||||||||||| ||||||||||||  ||||||||||||||    
T  9050148 tgattatattgaactatgtcattttttcaaaattttatctatgtcgacgtgtca 9050201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 233 - 277
Target Start/End: Complemental strand, 6091372 - 6091328
Alignment:
Q  233 ttgattacattgaattatgtcattttctcaaaattttatggatgt 277  Q
    ||||||| |||||||||| |||||||||||||||||||| |||||    
T  6091372 ttgattatattgaattatatcattttctcaaaattttattgatgt 6091328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 278
Target Start/End: Complemental strand, 31377036 - 31377000
Alignment:
Q  242 ttgaattatgtcattttctcaaaattttatggatgtc 278  Q
    |||||||||||||||||||||||||||||| ||||||    
T  31377036 ttgaattatgtcattttctcaaaattttattgatgtc 31377000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 44317294 - 44317338
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||||| ||||||||||||||||||||||||| | ||||||||||    
T  44317294 acacttatgattacattgaattatgtcatttttttaaaattttat 44317338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Original strand, 38134421 - 38134451
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaa 264  Q
    |||||||||||||||||||||||||||||||    
T  38134421 tgattacattgaattatgtcattttctcaaa 38134451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Original strand, 44172905 - 44172935
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaa 264  Q
    |||||||||||||||||||||||||||||||    
T  44172905 tgattacattgaattatgtcattttctcaaa 44172935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 10893347 - 10893392
Alignment:
Q  219 cgataccaacacttttgattacattgaattatgtcattttctcaaa 264  Q
    |||||||||||| |  ||||||||| ||||||||||||||||||||    
T  10893347 cgataccaacacatgcgattacattcaattatgtcattttctcaaa 10893392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 29910754 - 29910689
Alignment:
Q  232 tttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtcatgtc 297  Q
    |||||||||||| |||| ||||||||||||||| ||  |  | |||| ||||||||||||||||||    
T  29910754 tttgattacattcaattctgtcattttctcaaatttccaccggtgtccacgtgtcagtgtcatgtc 29910689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 30516373 - 30516430
Alignment:
Q  235 gattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtc 292  Q
    |||||||||||||||| ||||||||||||| | || |   ||||||||||||||||||    
T  30516373 gattacattgaattatatcattttctcaaattattgttagtgtcgacgtgtcagtgtc 30516430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 291
Target Start/End: Original strand, 31808508 - 31808580
Alignment:
Q  218 acgataccaacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgt 291  Q
    |||| |||||||| | |||||||||||| || ||||||||||||||| | |||| | || ||||||||||||||    
T  31808508 acgacaccaacacatgtgattacattgacttgtgtcattttctcaaattattatcggtg-cgacgtgtcagtgt 31808580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 35238199 - 35238236
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||||| |||||||||||||||||||||||||| ||||    
T  35238199 tgattatattgaattatgtcattttctcaaaatattat 35238236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 272
Target Start/End: Complemental strand, 36196835 - 36196786
Alignment:
Q  223 accaacacttttgattacattgaattatgtcattttctcaaaattttatg 272  Q
    |||||||||| ||||||  |||||||||||  ||||||||||||||||||    
T  36196835 accaacacttgtgattatgttgaattatgttgttttctcaaaattttatg 36196786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 264
Target Start/End: Original strand, 36314631 - 36314672
Alignment:
Q  223 accaacacttttgattacattgaattatgtcattttctcaaa 264  Q
    |||||||| | ||||||||||||| |||||||||||||||||    
T  36314631 accaacacatatgattacattgaaatatgtcattttctcaaa 36314672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 309
Target Start/End: Original strand, 42720907 - 42720980
Alignment:
Q  236 attacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtcatgtccgatgtcggtgt 309  Q
    |||||||| |||||||| ||||| ||||| | |||  | |||| |||||||||||||||||| |||||| ||||    
T  42720907 attacatttaattatgtgattttttcaaattattagcggtgtcaacgtgtcagtgtcatgtctgatgtctgtgt 42720980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 10702552 - 10702595
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||||| | |||||||||||| |||||||||||||||||||||||    
T  10702552 acacttataattacattgaat-atgtcattttctcaaaattttat 10702595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 266
Target Start/End: Complemental strand, 18678192 - 18678160
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaat 266  Q
    |||||| ||||||||||||||||||||||||||    
T  18678192 tgattatattgaattatgtcattttctcaaaat 18678160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 292
Target Start/End: Original strand, 26205775 - 26205833
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtc 292  Q
    |||||||| ||||||||||||||||||||||||||||| | | ||||||||||||||||    
T  26205775 tgattacactgaattatgtcattttctcaaaattttatcggtatcgacgtgtcagtgtc 26205833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 229 - 271
Target Start/End: Original strand, 30080511 - 30080553
Alignment:
Q  229 acttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  30080511 acttgtgattacattgaattatgtcattttctcaaaattttat 30080553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 223 - 269
Target Start/End: Original strand, 16207595 - 16207641
Alignment:
Q  223 accaacacttttgattacattgaattatgtcattttctcaaaatttt 269  Q
    |||||||||| ||||||||||||||||||||| |||||| |||||||    
T  16207595 accaacacttgtgattacattgaattatgtcaatttctctaaatttt 16207641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 218 - 292
Target Start/End: Complemental strand, 32444826 - 32444752
Alignment:
Q  218 acgataccaacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtc 292  Q
    |||| ||| |||| |||||||||||||||||||||||| |||||||| | |||  | ||| ||||||||||||||    
T  32444826 acgacaccgacacatttgattacattgaattatgtcatcttctcaaattgttaatggtgttgacgtgtcagtgtc 32444752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 42192320 - 42192283
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttat 271  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  42192320 tgattacattgaattatgtcattgtctcaaaattttat 42192283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 309190 - 309150
Alignment:
Q  246 attatgtcattttctcaaaattttatggatgtcgacgtgtc 286  Q
    |||||||||||||||||||||||||| | ||||||||||||    
T  309190 attatgtcattttctcaaaattttatcggtgtcgacgtgtc 309150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 21319953 - 21319997
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||||| ||||||||||||||||| ||||||| ||||||||||||    
T  21319953 acacttgtgattacattgaattatatcattttttcaaaattttat 21319997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 28296388 - 28296320
Alignment:
Q  218 acgataccaacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtc 286  Q
    |||| |||||||| | ||| ||||||||||||||||||||||||||| | |||| | ||||||| ||||    
T  28296388 acgacaccaacacatatgagtacattgaattatgtcattttctcaaattattatcggtgtcgacttgtc 28296320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 285
Target Start/End: Original strand, 11596470 - 11596521
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgt 285  Q
    ||||||||||||||||||||||||||||||| | |||| | | |||||||||    
T  11596470 tgattacattgaattatgtcattttctcaaattattatcggtatcgacgtgt 11596521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 227 - 293
Target Start/End: Original strand, 19167584 - 19167651
Alignment:
Q  227 acacttttgattacattgaattatgtca-ttttctcaaaattttatggatgtcgacgtgtcagtgtca 293  Q
    |||||| ||||||||||||||| ||||| |||| |||||||||||| | |||| ||||||| ||||||    
T  19167584 acacttgtgattacattgaattgtgtcatttttttcaaaattttatcggtgtcaacgtgtctgtgtca 19167651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 38784868 - 38784813
Alignment:
Q  216 atacgataccaacacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||||||||  |||||| ||||||||||||||||| ||||||| ||| ||||||||    
T  38784868 atacgatactgacacttgtgattacattgaattatatcattttttcacaattttat 38784813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 299
Target Start/End: Original strand, 14840126 - 14840189
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtcatgtccg 299  Q
    ||||||| |||||||||| |||| ||||||||||||||  |||||   ||||||||||||||||||    
T  14840126 tgattactttgaattatgccattgtctcaaaattttatccatgtc--agtgtcagtgtcatgtccg 14840189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 264
Target Start/End: Original strand, 43208289 - 43208319
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaa 264  Q
    |||||||||||||||||||||||||||||||    
T  43208289 tgattacattgaattatgtcattttctcaaa 43208319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 291
Target Start/End: Original strand, 2039864 - 2039921
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgt 291  Q
    |||||||||||||| |||||||||||||||| | |||  | |||||||||||| ||||    
T  2039864 tgattacattgaatcatgtcattttctcaaattattaccggtgtcgacgtgtccgtgt 2039921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 186
Target Start/End: Original strand, 9031881 - 9031914
Alignment:
Q  153 tgttgtacggacacttctgattgaaggcgtgtcc 186  Q
    ||||| ||||||||||||||||||||||||||||    
T  9031881 tgttgcacggacacttctgattgaaggcgtgtcc 9031914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 10010598 - 10010561
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||||||| |||||||||||||||| ||||||||||||    
T  10010598 tgattacaatgaattatgtcattttttcaaaattttat 10010561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 264
Target Start/End: Complemental strand, 31264489 - 31264452
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaa 264  Q
    |||||| |||||||| ||||||||||||||||||||||    
T  31264489 acacttatgattacactgaattatgtcattttctcaaa 31264452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 264
Target Start/End: Original strand, 41558662 - 41558699
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaa 264  Q
    |||| ||| |||||||||||||||||||||||||||||    
T  41558662 acacatttaattacattgaattatgtcattttctcaaa 41558699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 262
Target Start/End: Complemental strand, 10009870 - 10009842
Alignment:
Q  234 tgattacattgaattatgtcattttctca 262  Q
    |||||||||||||||||||||||||||||    
T  10009870 tgattacattgaattatgtcattttctca 10009842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 38749567 - 38749635
Alignment:
Q  223 accaacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgt 291  Q
    |||||||| | | ||||||||||||||||||||||| ||||| | |||| | ||||||| |||| ||||    
T  38749567 accaacacatataattacattgaattatgtcattttttcaaattattatcggtgtcgacatgtccgtgt 38749635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0314 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 227 - 277
Target Start/End: Complemental strand, 8999 - 8949
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttatggatgt 277  Q
    |||||| ||||||| |||||||||||||||||||||||||||||| |||||    
T  8999 acacttgtgattacgttgaattatgtcattttctcaaaattttatcgatgt 8949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 218 - 284
Target Start/End: Original strand, 49179714 - 49179780
Alignment:
Q  218 acgataccaacacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtg 284  Q
    |||| ||| |||||| ||||||||| ||||||||||| |||||||||||||||| | ||||||||||    
T  49179714 acgacaccgacacttgtgattacatcgaattatgtcactttctcaaaattttatcggtgtcgacgtg 49179780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 14338498 - 14338535
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttat 271  Q
    ||||||||||||||||||||||||| ||||||||||||    
T  14338498 tgattacattgaattatgtcattttttcaaaattttat 14338535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 218 - 271
Target Start/End: Complemental strand, 15864305 - 15864252
Alignment:
Q  218 acgataccaacacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||| |||||||||  |||||| ||||||||||||||||||||||||| |||||    
T  15864305 acgacaccaacactaatgattatattgaattatgtcattttctcaaaactttat 15864252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 236 - 297
Target Start/End: Original strand, 41319327 - 41319388
Alignment:
Q  236 attacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtcatgtc 297  Q
    ||||||||||||||||||||||| ||||| | |||| | |||||||||||| ||||| ||||    
T  41319327 attacattgaattatgtcattttttcaaattattattggtgtcgacgtgtccgtgtcgtgtc 41319388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 292
Target Start/End: Original strand, 48202286 - 48202342
Alignment:
Q  236 attacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtc 292  Q
    |||||||| |||||||| ||||||||||| | |||||||||||| ||||||| ||||    
T  48202286 attacattaaattatgtgattttctcaaactattatggatgtcggcgtgtcaatgtc 48202342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 153 - 188
Target Start/End: Original strand, 34834871 - 34834906
Alignment:
Q  153 tgttgtacggacacttctgattgaaggcgtgtcccg 188  Q
    ||||| ||||||||||||||||||||||||||||||    
T  34834871 tgttgcacggacacttctgattgaaggcgtgtcccg 34834906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 248 - 309
Target Start/End: Original strand, 3180793 - 3180854
Alignment:
Q  248 tatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtcatgtccgatgtcggtgt 309  Q
    ||||||||||||| ||||||||||   ||| |||||||||||||| |||||| |||| ||||    
T  3180793 tatgtcattttcttaaaattttatcattgtagacgtgtcagtgtcctgtccggtgtccgtgt 3180854  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Original strand, 52558143 - 52558180
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||||||||||||||||||| |||||||||| ||||||    
T  52558143 tgattacattgaattatgtccttttctcaaatttttat 52558180  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 232 - 264
Target Start/End: Complemental strand, 21149113 - 21149081
Alignment:
Q  232 tttgattacattgaattatgtcattttctcaaa 264  Q
    |||||||||| ||||||||||||||||||||||    
T  21149113 tttgattacactgaattatgtcattttctcaaa 21149081  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 34409357 - 34409409
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtc 286  Q
    |||||||||||||||||||||||||||| || | |||| | ||| ||||||||    
T  34409357 tgattacattgaattatgtcattttctcgaagtattatcggtgttgacgtgtc 34409409  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 264
Target Start/End: Original strand, 40017386 - 40017414
Alignment:
Q  236 attacattgaattatgtcattttctcaaa 264  Q
    |||||||||||||||||||||||||||||    
T  40017386 attacattgaattatgtcattttctcaaa 40017414  T

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Target: scaffold0504 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 271
Target Start/End: Original strand, 8705 - 8749
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttat 271  Q
    |||||| || ||||||||||| |||||||||||||||||||||||    
T  8705 acacttgtggttacattgaatcatgtcattttctcaaaattttat 8749  T

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Target: scaffold0504; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 198
Target Start/End: Original strand, 8645 - 8691
Alignment:
Q  153 tgttgtacggacacttctgattgaaggcgtgtccc-gtgtctgacac 198  Q
    ||||| |||||||||||||||||||||| |||||| |||||||||||    
T  8645 tgttgcacggacacttctgattgaaggcatgtcccggtgtctgacac 8691  T

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Target: scaffold0011 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 234 - 309
Target Start/End: Original strand, 240036 - 240111
Alignment:
Q  234 tgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtcatgtccgatgtcggtgt 309  Q
    ||||||||||||||||| | ||||||||||| | |||| | |||| || |||| |||||||||||| |||| ||||    
T  240036 tgattacattgaattatattattttctcaaattattatagttgtcaacatgtccgtgtcatgtccggtgtccgtgt 240111  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 292
Target Start/End: Original strand, 225276 - 225341
Alignment:
Q  227 acacttttgattacattgaattatgtcattttctcaaaattttatggatgtcgacgtgtcagtgtc 292  Q
    |||||| | ||||||||| ||||||||||||||||||| | ||||   ||||| ||||||||||||    
T  225276 acacttataattacattgtattatgtcattttctcaaattattatctgtgtcggcgtgtcagtgtc 225341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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