View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19486_high_41 (Length: 217)

Name: NF19486_high_41
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19486_high_41
NF19486_high_41
[»] chr8 (3 HSPs)
chr8 (12-199)||(41381457-41381644)
chr8 (40-173)||(23662656-23662785)
chr8 (40-173)||(23666908-23667037)
[»] chr5 (2 HSPs)
chr5 (12-199)||(35046009-35046196)
chr5 (25-61)||(11304970-11305006)
[»] chr4 (8 HSPs)
chr4 (12-199)||(11910552-11910744)
chr4 (12-126)||(4887938-4888052)
chr4 (55-187)||(18175317-18175446)
chr4 (145-199)||(4888048-4888102)
chr4 (105-173)||(31982212-31982280)
chr4 (27-186)||(52630925-52631084)
chr4 (99-187)||(6635682-6635771)
chr4 (55-131)||(18172740-18172814)
[»] chr3 (2 HSPs)
chr3 (40-198)||(4664318-4664474)
chr3 (25-197)||(35085507-35085677)
[»] scaffold0002 (1 HSPs)
scaffold0002 (55-190)||(294519-294651)
[»] chr7 (5 HSPs)
chr7 (27-186)||(21493970-21494129)
chr7 (55-190)||(27873437-27873572)
chr7 (105-173)||(37707109-37707177)
chr7 (105-173)||(29914903-29914971)
chr7 (99-197)||(4896381-4896480)
[»] chr2 (4 HSPs)
chr2 (106-198)||(11674843-11674935)
chr2 (108-197)||(22831032-22831121)
chr2 (25-188)||(40929171-40929329)
chr2 (105-173)||(27408460-27408528)
[»] chr1 (8 HSPs)
chr1 (27-186)||(6161929-6162088)
chr1 (105-173)||(19027126-19027194)
chr1 (107-173)||(5947472-5947538)
chr1 (25-188)||(48504435-48504593)
chr1 (12-197)||(10030241-10030425)
chr1 (25-197)||(12156739-12156907)
chr1 (109-186)||(28990154-28990230)
chr1 (27-87)||(28990094-28990154)
[»] chr6 (1 HSPs)
chr6 (99-187)||(32092905-32092992)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 41381644 - 41381457
Alignment:
Q  12 cacagataaactgaagaaataaaatttgaatttaataaaacacaaattaattaaacaacacatatcatgataatatccatacaatcgataattagttttc 111  Q
    |||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  41381644 cacaaataaactaaataaataaaatttgaatttaataaaacacaaattaattaaacaacacatatcatgataatatccgtacaatcgataattagttttc 41381545  T
Q  112 gtacaaagtcataaatatttcaataatattcgtataaaccagaaaactaacaaaataaactaattatcataatattcgggcaaattcg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41381544 gtacaaagtcataaatatttcaataatattcgtataaaccagaaaactaacaaaataaactaattatcataatattcgggcaaattcg 41381457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 173
Target Start/End: Original strand, 23662656 - 23662785
Alignment:
Q  40 aatttaataaaacacaaattaattaaacaacacatatcatgataatatccatacaatcgataattagttttcgtacaaagtcataaatatttcaataata 139  Q
    ||||||| || ||||||||||||||||||  ||||||||| ||||| || ||| |||  |||   ||||||| |||||| ||||||||||||||||||||    
T  23662656 aatttaaaaagacacaaattaattaaacag-acatatcatcataatttc-atataatttatataaagttttcatacaaaatcataaatatttcaataata 23662753  T
Q  140 ttcgtataaaccagaaaactaacaaaataaacta 173  Q
    ||| || || |||||||||||  |||||||||||    
T  23662754 ttcatacaatccagaaaacta--aaaataaacta 23662785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 173
Target Start/End: Original strand, 23666908 - 23667037
Alignment:
Q  40 aatttaataaaacacaaattaattaaacaacacatatcatgataatatccatacaatcgataattagttttcgtacaaagtcataaatatttcaataata 139  Q
    ||||||| || ||||||||||||||||||  ||||||||| ||||| || ||| |||  |||   ||||||| |||||| ||||||||||||||||||||    
T  23666908 aatttaaaaagacacaaattaattaaacag-acatatcatcataatttc-atataatttatataaagttttcatacaaaatcataaatatttcaataata 23667005  T
Q  140 ttcgtataaaccagaaaactaacaaaataaacta 173  Q
    ||| || || |||||||||||  |||||||||||    
T  23667006 ttcatacaatccagaaaacta--aaaataaacta 23667037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 35046196 - 35046009
Alignment:
Q  12 cacagataaactgaagaaataaaatttgaatttaataaaacacaaattaattaaacaacacatatcatgataatatccatacaatcgataattagttttc 111  Q
    |||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  35046196 cacaaataaactaaataaataaaatttgaatttaataaaacacaaattaattaaacaacacatatcatgataatatccgtacaatcgataattagttttc 35046097  T
Q  112 gtacaaagtcataaatatttcaataatattcgtataaaccagaaaactaacaaaataaactaattatcataatattcgggcaaattcg 199  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35046096 gtacaaagtcataaatatttcaataatattcgtataaatcagaaaactaacaaaataaactaattatcataatattcgggcaaattcg 35046009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 61
Target Start/End: Complemental strand, 11305006 - 11304970
Alignment:
Q  25 aagaaataaaatttgaatttaataaaacacaaattaa 61  Q
    |||||||||||||| |||||||||| |||||||||||    
T  11305006 aagaaataaaatttaaatttaataagacacaaattaa 11304970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 144; Significance: 7e-76; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 12 - 199
Target Start/End: Complemental strand, 11910744 - 11910552
Alignment:
Q  12 cacagataaactgaagaaataaaatttgaatttaataaaacacaaat----taattaaacaacacatatcatgataatatccatacaatcgataattagt 107  Q
    |||| ||||| | ||||||||||||||||||||||||||||||||||    ||||||| ||||||||||||||||||||||| ||||||| |||||||||    
T  11910744 cacaaataaattaaagaaataaaatttgaatttaataaaacacaaataaattaattaagcaacacatatcatgataatatccgtacaatccataattagt 11910645  T
Q  108 ttt-cgtacaaagtcataaatatttcaataatattcgtataaaccagaaaactaacaaaataaactaattatcataatattcgggcaaattcg 199  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11910644 ttttcgtacaaagtcataaatatttcaataatattcgtataaaccagaaaactaacaaaataaactaattatcataatattcgggcaaattcg 11910552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 4887938 - 4888052
Alignment:
Q  12 cacagataaactgaagaaataaaatttgaatttaataaaacacaaattaattaaacaacacatatcatgataatatccatacaatcgataattagttttc 111  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  4887938 cacagataaactaaagaaataaaatttgaatttaataaaacacaaattaattaaacaacacatttcatgataatatccatacaatcgataattagttttc 4888037  T
Q  112 gtacaaagtcataaa 126  Q
    |||||||||||||||    
T  4888038 gtacaaagtcataaa 4888052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 55 - 187
Target Start/End: Original strand, 18175317 - 18175446
Alignment:
Q  55 aaattaattaaacaacacatatcatgataatatccatacaatcgataattagttttcgtacaaagtcataaatatttcaataatattcgtataaaccaga 154  Q
    |||||||||||||  |||||||||| |||||||   |||||| ||||| || ||||| |||||| |||||||||||| |||||||||| || || | |||    
T  18175317 aaattaattaaac--cacatatcattataatatttgtacaatagataaataattttcatacaaaatcataaatattttaataatattcttacaatctaga 18175414  T
Q  155 aaactaacaaaataaactaattatcataatatt 187  Q
    ||||||| |||| ||||||||||||||||||||    
T  18175415 aaactaagaaaa-aaactaattatcataatatt 18175446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 145 - 199
Target Start/End: Original strand, 4888048 - 4888102
Alignment:
Q  145 ataaaccagaaaactaacaaaataaactaattatcataatattcgggcaaattcg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  4888048 ataaaccagaaaactaacaaaataaactaattatcataatattcgggtaaattcg 4888102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 31982280 - 31982212
Alignment:
Q  105 agttttcgtacaaagtcataaatatttcaataatattcgtataaaccagaaaactaacaaaataaacta 173  Q
    |||||||||||||| | ||||||||||||||||||||| || || ||| ||||||||||||||||||||    
T  31982280 agttttcgtacaaaattataaatatttcaataatattcatacaatccaaaaaactaacaaaataaacta 31982212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 27 - 186
Target Start/End: Complemental strand, 52631084 - 52630925
Alignment:
Q  27 gaaataaaatttgaatttaataaaacacaaattaattaaaca-acacatatcatgataatatccatacaatcgataattagttttcgtacaaagtcataa 125  Q
    |||||||| ||| |||||||||| ||| ||||||||||||   |   ||||||| ||||||| | ||||||| |||| |  ||||||||||||  ||| |    
T  52631084 gaaataaatttttaatttaataagacaaaaattaattaaattgatttatatcatcataatattcgtacaatccataaatcattttcgtacaaaaccatga 52630985  T
Q  126 atatttcaataatattcgtataaaccagaaaactaacaaaataaactaattatcataatat 186  Q
    |||| ||||||||||||||| || | | |||||||||| |||||| |||||||||||||||    
T  52630984 atatatcaataatattcgtacaatcta-aaaactaacataataaagtaattatcataatat 52630925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 6635771 - 6635682
Alignment:
Q  99 ataattagttttcgtacaaagtcataaatatttcaataatattcgtataaacc-agaaaactaacaaaataaactaattatcataatatt 187  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||| || || || | ||||||| ||  ||||||||||||||| ||||||    
T  6635771 ataaatagtttttgtacaaaatcataaatatttcaataatattcatacaatccaaaaaaactatcaggataaactaattatcaaaatatt 6635682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 55 - 131
Target Start/End: Original strand, 18172740 - 18172814
Alignment:
Q  55 aaattaattaaacaacacatatcatgataatatccatacaatcgataattagttttcgtacaaagtcataaatattt 131  Q
    |||||||||||||  |||||||||| ||||||||  |||||| ||||| || ||||| |||||| ||||||||||||    
T  18172740 aaattaattaaac--cacatatcattataatatctgtacaatagataaataattttcatacaaaatcataaatattt 18172814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 198
Target Start/End: Original strand, 4664318 - 4664474
Alignment:
Q  40 aatttaataaaacacaaattaattaaacaacacatatcatgataatatccatacaatcgataattagttttcgtacaaagtcataaatatttcaataata 139  Q
    |||||| ||| ||||||| ||||||||| |||  |||||| | ||||| | ||||||  |||| ||||||||||||||| | ||||||||||||||||||    
T  4664318 aatttattaagacacaaactaattaaacgaca--tatcatcaaaatattcgtacaatgcataaatagttttcgtacaaaattataaatatttcaataata 4664415  T
Q  140 ttcgtataaaccagaaaactaacaaaataaactaattatcataatattcgggcaaattc 198  Q
    |||||| || | ||| || ||||| ||||||||||||||||||||||| ||||||||||    
T  4664416 ttcgtacaatctagagaattaacagaataaactaattatcataatatttgggcaaattc 4664474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 35085507 - 35085677
Alignment:
Q  25 aagaaataaaatttgaatttaataaaacacaaattaattaaacaacacatatcatgataatatccatacaatcgataattagttttcgtacaaagtcata 124  Q
    |||||||||||||| ||||||||||    ||||||||||| || | |  |||||| |||||||   | ||||  |||| |||||||| |||||| |||||    
T  35085507 aagaaataaaattttaatttaataagtttcaaattaattagacgata--tatcatcataatattagtgcaataaataaatagttttcttacaaaatcata 35085604  T
Q  125 aatatttcaataatattcgtataaaccagaaaactaacaaaataaactaattatcataatattcgggcaaatt 197  Q
    |||||||||||||||||||| ||| | | |||||||||| |||||| ||||||||||||||||| || |||||    
T  35085605 aatatttcaataatattcgtctaatctaaaaaactaacagaataaattaattatcataatattctggtaaatt 35085677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 55 - 190
Target Start/End: Complemental strand, 294651 - 294519
Alignment:
Q  55 aaattaattaaacaacacatatcatgataatatccatacaatcgataattagttttcgtacaaagtcataaatatttcaataatattcgtataaaccaga 154  Q
    |||||||||||||  |||||||||| |||||||   |||||| ||||| || ||||| |||||| |||||||||||| |||||||||| || || | |||    
T  294651 aaattaattaaac--cacatatcattataatatttgtacaatagataaataattttcatacaaaatcataaatattttaataatattcttacaatctaga 294554  T
Q  155 aaactaacaaaataaactaattatcataatattcgg 190  Q
    ||||||| |||| |||||||||||||||||||||||    
T  294553 aaactaagaaaa-aaactaattatcataatattcgg 294519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 21493970 - 21494129
Alignment:
Q  27 gaaataaaatttgaatttaataaaacacaaattaattaaaca-acacatatcatgataatatccatacaatcgataattagttttcgtacaaagtcataa 125  Q
    |||||||| ||| |||||||||| ||| |||||||||||||  ||| ||||||| ||||||| | ||||||| |||| |  ||||||||||||  ||| |    
T  21493970 gaaataaagttttaatttaataagacaaaaattaattaaactgacatatatcatcataatattcgtacaatccataaatcattttcgtacaaaaccatga 21494069  T
Q  126 atatttcaataatattcgtataaaccagaaaactaacaaaataaactaattatcataatat 186  Q
    |||| ||||||||||||||| || | | |||||||||| |||||| |||||||||||||||    
T  21494070 atatatcaataatattcgtacaatcta-aaaactaacataataaagtaattatcataatat 21494129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 55 - 190
Target Start/End: Complemental strand, 27873572 - 27873437
Alignment:
Q  55 aaattaattaaacaacacatatcatgataatatccatacaatcgataattagttttcgtacaaagtcataaatatttcaataatattcgtataaaccaga 154  Q
    |||||||||||||  |||||||||| |||||||  |||||||  |||| || ||||| |||||| |||||||||||| ||||||||| ||| || | |||    
T  27873572 aaattaattaaac--cacatatcattataatatttatacaatacataaataattttcatacaaaatcataaatattttaataatattggtacaatctaga 27873475  T
Q  155 aaacta--acaaaataaactaattatcataatattcgg 190  Q
    ||||||  | |||| |||||||||||||||||||||||    
T  27873474 aaactaagaaaaaaaaaactaattatcataatattcgg 27873437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 37707177 - 37707109
Alignment:
Q  105 agttttcgtacaaagtcataaatatttcaataatattcgtataaaccagaaaactaacaaaataaacta 173  Q
    |||||||||||||| ||||||||||||||||||||||| || || |||||||||||| |||||||||||    
T  37707177 agttttcgtacaaaatcataaatatttcaataatattcatacaatccagaaaactaataaaataaacta 37707109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 29914903 - 29914971
Alignment:
Q  105 agttttcgtacaaagtcataaatatttcaataatattcgtataaaccagaaaactaacaaaataaacta 173  Q
    |||||||||||||| | ||||||||||||||||||||| || || ||| ||||||||||||||||||||    
T  29914903 agttttcgtacaaaattataaatatttcaataatattcatacaatccaaaaaactaacaaaataaacta 29914971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 99 - 197
Target Start/End: Complemental strand, 4896480 - 4896381
Alignment:
Q  99 ataattagttttcgtacaaagtcataaatatttcaataatattcgtataaac-cagaaaactaacaaaataaactaattatcataatattcgggcaaatt 197  Q
    |||| |||||||| |||||| |||||||||||||||||||||||||  || |  | |||||||||  ||||||||||||||||||||||||  |||||||    
T  4896480 ataaatagttttcttacaaaatcataaatatttcaataatattcgtccaatctaaaaaaactaacggaataaactaattatcataatattctagcaaatt 4896381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 106 - 198
Target Start/End: Original strand, 11674843 - 11674935
Alignment:
Q  106 gttttcgtacaaagtcataaatatttcaataatattcgtataaaccagaaaactaacaaaataaactaattatcataatattcgggcaaattc 198  Q
    ||||||||||||| |||||||||||| ||||| || |||| || | ||||||| |||| ||||||| ||||||||||||||||||||||||||    
T  11674843 gttttcgtacaaaatcataaatatttaaataacatccgtacaatctagaaaacaaacagaataaacaaattatcataatattcgggcaaattc 11674935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 22831121 - 22831032
Alignment:
Q  108 tttcgtacaaagtcataaatatttcaataatattcgtataaaccagaaaactaacaaaataaactaattatcataatattcgggcaaatt 197  Q
    |||| |||||| |||||| ||||||||||||||||||| || | | || ||||||  |||||||||||||||||||||||||||||||||    
T  22831121 tttcttacaaaatcataagtatttcaataatattcgtacaatctaaaacactaacggaataaactaattatcataatattcgggcaaatt 22831032  T

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Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 188
Target Start/End: Complemental strand, 40929329 - 40929171
Alignment:
Q  25 aagaaataaaatttgaatttaataaaacacaaattaattaaacaacacatatcatgataatatccatacaatcgataattagttttcgtacaaagtcata 124  Q
    |||||||||||||| |||||||||| ||||||||||||||| | | |  |||||| ||| |  |   |||||| |||| ||||||||||| ||| |||||    
T  40929329 aagaaataaaattttaatttaataagacacaaattaattaatcgata--tatcataatatttgc---acaatccataaatagttttcgtaaaaaatcata 40929235  T
Q  125 aatatttcaataatattcgtataaaccagaaaactaacaaaataaactaattatcataatattc 188  Q
    ||||||| ||||||| || || || | |||||||||||| ||||| ||||| || |||||||||    
T  40929234 aatatttaaataatactcatacaatctagaaaactaacataataagctaatgataataatattc 40929171  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 173
Target Start/End: Original strand, 27408460 - 27408528
Alignment:
Q  105 agttttcgtacaaagtcataaatatttcaataatattcgtataaaccagaaaactaacaaaataaacta 173  Q
    |||||||||||||| | |||||||||| |||||||||| || || ||| ||||||||||||||||||||    
T  27408460 agttttcgtacaaaattataaatattttaataatattcatacaatccaaaaaactaacaaaataaacta 27408528  T

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Target: chr1 (Bit Score: 49; Significance: 3e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 6161929 - 6162088
Alignment:
Q  27 gaaataaaatttgaatttaataaaacacaaattaattaaaca-acacatatcatgataatatccatacaatcgataattagttttcgtacaaagtcataa 125  Q
    |||||||| ||| |||||||||| ||| ||||||||||||   | | ||||||| ||||||| | ||||||| |||| |  ||||||||||||  ||| |    
T  6161929 gaaataaagttttaatttaataagacaaaaattaattaaaatgaaatatatcatcataatattcgtacaatccataaatcattttcgtacaaaaccatga 6162028  T
Q  126 atatttcaataatattcgtataaaccagaaaactaacaaaataaactaattatcataatat 186  Q
    |||| ||||||||||||||| || | | |||||||||| |||||| |||||||||||||||    
T  6162029 atatatcaataatattcgtacaatcta-aaaactaacataataaagtaattatcataatat 6162088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 105 - 173
Target Start/End: Complemental strand, 19027194 - 19027126
Alignment:
Q  105 agttttcgtacaaagtcataaatatttcaataatattcgtataaaccagaaaactaacaaaataaacta 173  Q
    |||||||||||||| ||||||||||||||||||||||| || || |||||||||||| |||||||||||    
T  19027194 agttttcgtacaaaatcataaatatttcaataatattcatacaatccagaaaactaataaaataaacta 19027126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 107 - 173
Target Start/End: Complemental strand, 5947538 - 5947472
Alignment:
Q  107 ttttcgtacaaagtcataaatatttcaataatattcgtataaaccagaaaactaacaaaataaacta 173  Q
    |||||||||||| ||||||||||||||||||||||| || || |||||||||||| |||||||||||    
T  5947538 ttttcgtacaaaatcataaatatttcaataatattcatacaatccagaaaactaataaaataaacta 5947472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 48504435 - 48504593
Alignment:
Q  25 aagaaataaaatttgaatttaataaaacacaaattaattaaacaacacatatcatgataatatccatacaatcgataattagttttcgtacaaagtcata 124  Q
    |||||||||||||| |||||||||| ||||||||||||||| | | |  ||||||   |||||   ||||||| |||| ||||||||||| ||| |||||    
T  48504435 aagaaataaaattttaatttaataagacacaaattaattaatcgata--tatcat---aatatttgtacaatccataaatagttttcgtaaaaaatcata 48504529  T
Q  125 aatatttcaataatattcgtataaaccagaaaactaacaaaataaactaattatcataatattc 188  Q
    ||||||| ||||||| || || || | ||| |||||||| ||||| ||||| || |||||||||    
T  48504530 aatatttaaataatactcatacaatctagagaactaacataataagctaatgataataatattc 48504593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 197
Target Start/End: Original strand, 10030241 - 10030425
Alignment:
Q  12 cacagataaactgaagaaataaaatttgaatttaataaaacacaaattaattaaacaacacatatcatgataatatccatacaatcgataattagttttc 111  Q
    |||| ||||| | |||||||||||||| ||||||||||    ||||||| ||| |||| |  |||||  ||||||| | | ||||  |||| || |||||    
T  10030241 cacaaataaattaaagaaataaaattttaatttaataagtttcaaattacttagacaata--tatcaacataatattcgtgcaataaataaatatttttc 10030338  T
Q  112 gtacaaagtcataaatatttcaataatattcgtataaaccagaaaac-taacaaaataaactaattatcataatattcgggcaaatt 197  Q
     |||||| |||||| ||||||||||||||||||| || | | ||||  ||||  || ||||||||||||||||||||||||||||||    
T  10030339 ttacaaaatcataagtatttcaataatattcgtacaatctaaaaaaagtaacggaaaaaactaattatcataatattcgggcaaatt 10030425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 197
Target Start/End: Original strand, 12156739 - 12156907
Alignment:
Q  25 aagaaataaaatttgaatttaataaaacacaaattaattaaacaacacatatcatgataatatccatacaatcgataattagttttcgtacaaagtcata 124  Q
    |||||||||||||  |||| ||||| ||||||||||||||||| |||  |||||| | ||||| | ||||||| |||| | ||||| | | ||| |||||    
T  12156739 aagaaataaaatt--aattcaataagacacaaattaattaaacgaca--tatcatcaaaatattcgtacaatccataaattgtttttgcaaaaaatcata 12156834  T
Q  125 aatatttcaataatattcgtataaaccagaaaactaacaaaataaactaattatcataatattcgggcaaatt 197  Q
    |||||||  |||||||| ||| ||    ||||||||||| ||||| |||||||||||||| || || ||||||    
T  12156835 aatattttgataatatttgtacaattttgaaaactaacataataagctaattatcataattttaggacaaatt 12156907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 109 - 186
Target Start/End: Original strand, 28990154 - 28990230
Alignment:
Q  109 ttcgtacaaagtcataaatatttcaataatattcgtataaaccagaaaactaacaaaataaactaattatcataatat 186  Q
    ||||||||||  ||| | ||| |||||||||||||||||| | | |||||||||| |||||| |||||||||||||||    
T  28990154 ttcgtacaaaaccattattatatcaataatattcgtataatcta-aaaactaacataataaagtaattatcataatat 28990230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 87
Target Start/End: Original strand, 28990094 - 28990154
Alignment:
Q  27 gaaataaaatttgaatttaataaaacacaaattaattaaacaacacatatcatgataatat 87  Q
    |||||||| ||| |||||||||| ||||||||||||||||||| | |||| || |||||||    
T  28990094 gaaataaagttttaatttaataagacacaaattaattaaacaatatatattatcataatat 28990154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 32092992 - 32092905
Alignment:
Q  99 ataattagttttcgtacaaagtcataaatatttcaataatattcgtataaaccagaaaactaacaa-aataaactaattatcataatatt 187  Q
    |||| ||||||| ||||||| |||||||||||||||||||||||  ||| |  | ||||||||||| |||||||||||||||| ||||||    
T  32092992 ataaatagtttttgtacaaaatcataaatatttcaataatattc--atacaataaaaaactaacaagaataaactaattatcaaaatatt 32092905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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