View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19486_high_8 (Length: 498)
Name: NF19486_high_8
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19486_high_8 |
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Alignment Details
Target: chr1 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 20 - 369
Target Start/End: Complemental strand, 47517451 - 47517102
Alignment:
| Q |
20 |
ggagacaccatgcagtttacatcgattaattttccgttaaagagaatgtagttctgacgcagccgtatacactagactgtagccgcccacggtagaaact |
119 |
Q |
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| T |
47517451 |
ggagacaccatgcagtttacatcgattaattttccgttaaagagaatgtagttctgacgcagccgtatacactagactgtagccgcccgcggtagaaact |
47517352 |
T |
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| Q |
120 |
cgaacctcctgctacttttttgtctctttagtgctccgtgttgtaagaagtgtgaaattgtttcatgatattgaacaaaggaaactccaatccaacaata |
219 |
Q |
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| T |
47517351 |
cgaacctcctgctactttttcgtctctttagtgctccgtgttgtaagaagtgtgaaactgtttcatgatattgaacaaaggaaactccaatccaacaata |
47517252 |
T |
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| Q |
220 |
tatttggtcccaaactctaatgctaaatggacatcgaaggaataggtgttgcgtgttttctggttctgcgaagcagtacacacaaaacctttgatgtggt |
319 |
Q |
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| T |
47517251 |
tatttggtcccaaactctaacgctaaatgggcatcgaaggaataggtgttgcgtgttttctggttctgcgaagcagcacacacaaaacctttgatgtggt |
47517152 |
T |
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| Q |
320 |
gaggttaagatgccccttttgaacaaattatctcttgtcgccaatctatc |
369 |
Q |
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| T |
47517151 |
gaggttaagatgccccttttgaacaaattatctcttgtcgccaatctatc |
47517102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 371 - 484
Target Start/End: Complemental strand, 47517028 - 47516915
Alignment:
| Q |
371 |
tccatattttctgctgaaaaactaaccttggacagcaatgagtaatatgattttaccgtaaaactgcacggtggatccagagccgaaacccatgaatctg |
470 |
Q |
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| T |
47517028 |
tccatattttctgctgaaaaactaaccttagacagcaatgagtaatatgattttaccgtaaaactgcacggtggatccagagccgaaacccatgaatctg |
47516929 |
T |
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| Q |
471 |
ctatattttctgcc |
484 |
Q |
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| T |
47516928 |
ctatattttctgcc |
47516915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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