View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19486_low_10 (Length: 486)
Name: NF19486_low_10
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19486_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 16 - 484
Target Start/End: Original strand, 31601359 - 31601827
Alignment:
| Q |
16 |
cagtaaggcatctgtttctcaacatgcaggcagaactgaagcctaatactgttatcgtctccattcttccagaatttaataacgagtttcccgagtactc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31601359 |
cagtaaggcatctgtttctcaacatgcaggcagaactgaagcctgatactgtcatcgtctccattcttccagaatttaataacgagtttcccgagtactc |
31601458 |
T |
|
| Q |
116 |
tcctgctgaagttaagaaagtgtcggctcttggtgctgtccccttgaaatccatgcatattaagaaggtaggtttgatattttcattttacttctgactt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31601459 |
tcctgctgaagttaagaaagtgtcggctcttggtgctgtccccttgaaatccatgcatattaagaaggtaggtttgatattttcattttacttctgactt |
31601558 |
T |
|
| Q |
216 |
tttattccatctacttgcttatattgggtgctatcgttagctggaaagaaaggaagcaggtcttctgctatatgtaattaaaaaattggttcaaggaatt |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31601559 |
tttattccatctacttgcttatattgggtgctatcgttagctggaaagaaaggaagcaggtcttctgctatatgtaattaaaaaattggttcaaggaatt |
31601658 |
T |
|
| Q |
316 |
atatgctacttatattcttaaatttgctcctgaactttgaactttgttctttaccacatgatttattgagcctttctattgtctggtaactagatttact |
415 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31601659 |
atatgctacttatattcttaaatttgctcctgaactttgaacttttttctttaccacatgatttattgagcctttctattgtctggtaactagatttact |
31601758 |
T |
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| Q |
416 |
catttcctggtcaaattggatttttatttctaagatctttatgttgttatcagtatctctgctcctcca |
484 |
Q |
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| T |
31601759 |
catttcctggtcaaattggatttttatttctaagatctttatgttgttatcagtatcactgctcatcca |
31601827 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 242
Target Start/End: Complemental strand, 7992271 - 7992091
Alignment:
| Q |
63 |
actgttatcgtctccattcttc--cagaatttaataacgagtttcccgagtactctcctgctgaagttaagaaagtgtcggctcttggtgctgtccc--- |
157 |
Q |
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|||||||||||||| ||||||| ||| |||| ||| |||||||| |||| |||||||||||||||| ||||||| | | | ||||| ||||| |
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| T |
7992271 |
actgttatcgtctctattcttctgcagcttttagtaatgagtttcctgagttctctcctgctgaagttgagaaagtacctgtccatggtgttgtccttct |
7992172 |
T |
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| Q |
158 |
cttgaaatccatgcatattaagaaggtaggtttgatattttcattttacttctgactttttattccatctacttgcttatattgg |
242 |
Q |
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| T |
7992171 |
cttgaaatccatgcaaattaagaaggtaagtttgatattttgattttac----gagttttcattccatctacttgtttatattgg |
7992091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 63 - 335
Target Start/End: Original strand, 49777016 - 49777289
Alignment:
| Q |
63 |
actgttatcgtctccattcttc--cagaatttaataacgagtttcccgagtactctcctgctgaagttaagaaagtgtcggctcttggtgctgtccc--- |
157 |
Q |
| |
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|||||||||||||| ||||||| ||| |||| ||| |||||||| |||| |||||||||||||||| | ||||| | | || ||||| ||||| |
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| T |
49777016 |
actgttatcgtctctattcttctgcagcttttagtaatgagtttcctgagttctctcctgctgaagttgaaaaagtacctgttcatggtgttgtccttct |
49777115 |
T |
|
| Q |
158 |
cttgaaatccatgcatattaagaaggtaggtttgatattttcattttacttctgactttttattccatctacttgcttatattgggtgctatcgttagct |
257 |
Q |
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||||||||||||||| |||||||||||| |||||||||||| ||| ||| || |||| ||||||||||||| ||||||||| || |||| ||| || |
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| T |
49777116 |
cttgaaatccatgcaaattaagaaggtaagtttgatattttgattgtac----gagttttctttccatctacttgtttatattggatgttatcattaact |
49777211 |
T |
|
| Q |
258 |
ggaaagaaaggaagcaggtcttctgctatatgtaattaaaaaattggttcaaggaattatatgctacttatattctta |
335 |
Q |
| |
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|| | ||||||| |||| ||| |||||| | | || || |||||| | || |||||| ||||||||||||||| |
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| T |
49777212 |
ataaggcaaggaagtaggttttccactatatatcaatagcaatttggtttatggtgttatatactacttatattctta |
49777289 |
T |
|
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