View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19486_low_13 (Length: 436)
Name: NF19486_low_13
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19486_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 25 - 426
Target Start/End: Original strand, 4239354 - 4239759
Alignment:
| Q |
25 |
taccatggaagaaacagaagccaatggtggatcttctagtgtcttggaatgctccccaatctgaatgtgagaaccccttcaaagttaatgatggggatga |
124 |
Q |
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| T |
4239354 |
taccatggaagaaacagaagccaatggtggatcttctagtgtcttggcatgctccccaatctgaatgtgagaaccccttcaaagttaatgatggggatga |
4239453 |
T |
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| Q |
125 |
gctgaaaaataaccttttaccacgattgttttttagaaacttgagaacatgcaaccctgccagcataggctcatctgtaggtgcatctaggaattgggta |
224 |
Q |
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| T |
4239454 |
gctgaaaaataaccttttaccacgattgttttttagaaacttgagaacatgcaaccctgccagcataggctcatctgtaggtgcatctaggaattgggta |
4239553 |
T |
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| Q |
225 |
agttggctgagatccaagtctatttaacacaaataactagagttagtgttataattaaaaaatggcattgcattacatcataattattgtag--tagcac |
322 |
Q |
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| T |
4239554 |
agttggctgagatccaagtctatttaacacaaataactagagttagtgttataattaaaaaatggcattgcattacatcataattattgtagtatagcac |
4239653 |
T |
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| Q |
323 |
atactc--aaaaacatgcatttttatttctaggacttgattgcactaactgaaactacactagttaccttttaacgacttctacttggagaatgtttttc |
420 |
Q |
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| T |
4239654 |
atactcaaaaaaacatgcatttttatttctaggacttgattgcactaactgaaactacactagttaccttttaacaacttctacttggagaatgtttttc |
4239753 |
T |
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| Q |
421 |
cctttg |
426 |
Q |
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| T |
4239754 |
cctttg |
4239759 |
T |
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Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 315 - 406
Target Start/End: Original strand, 42818977 - 42819068
Alignment:
| Q |
315 |
agtagcacatactcaaaaacatgcatttttatttctaggacttgattgcactaactgaaactacactagttaccttttaacgacttctactt |
406 |
Q |
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| T |
42818977 |
agtagcacatactcctgaacatgcatttctatttatagggccatattgcactaacttaaactacactagtttccttgtaaagacttctactt |
42819068 |
T |
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