View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19486_low_18 (Length: 382)

Name: NF19486_low_18
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19486_low_18
NF19486_low_18
[»] chr4 (1 HSPs)
chr4 (1-370)||(5991273-5991642)
[»] chr3 (9 HSPs)
chr3 (1-96)||(3872816-3872911)
chr3 (1-98)||(11494852-11494949)
chr3 (1-80)||(11488628-11488707)
chr3 (4-101)||(10187407-10187504)
chr3 (14-101)||(10080441-10080528)
chr3 (3-95)||(4133017-4133109)
chr3 (1-97)||(5968565-5968661)
chr3 (1-101)||(2922278-2922378)
chr3 (1-41)||(4057518-4057558)
[»] chr1 (1 HSPs)
chr1 (1-80)||(17314507-17314586)
[»] chr5 (2 HSPs)
chr5 (1-63)||(16449535-16449597)
chr5 (230-361)||(16449770-16449900)
[»] scaffold0603 (1 HSPs)
scaffold0603 (1-101)||(2092-2192)
[»] chr8 (1 HSPs)
chr8 (3-101)||(18390803-18390898)


Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 5991273 - 5991642
Alignment:
Q  1 aggaagcgagggaaagagtggcgtaagattgctcacattcctgccatagttatcgatgatgaattgatcacataagtttcatgtctaggtgagtctctga 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5991273 aggaagcgagggaaagagtggcgtaagattgctcatattcctgccatagttatcgatgatgaattgatcacataagtttcctgtctaggtgagtctctga 5991372  T
Q  101 agtgctttgtatatatttcttattttatgtactcatcaattaatattatcaatttcaataatatcaaatacaatattataacacttactcattttttaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5991373 agtgctttgtatatatttcttattttatgtactcatcaattaatattatcaatttcaataatatcaaatacaatattataacacttactcattttttaat 5991472  T
Q  201 cctgaaatcgaaatatgtttcaccgcagattctgcttaatcttgctgttttgagaagccaaatctgcatgcacgaactgcaactaaatccagtaaatgtt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5991473 cctgaaatcgaaatatgtttcaccgcagattctgcttaatcttgctgttttgagaagccaaatctgcatgcacgaactgcaactaaatccagtaaatgtt 5991572  T
Q  301 ttactgagcaggaacagatggaatggagaaacaacaacttaccgcaaatatgttaggtactttttgccta 370  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  5991573 ttactgagcaggaacagatggaatggagaaacaacaacttactgcaaatatgttaggtactttttgccta 5991642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 96
Target Start/End: Original strand, 3872816 - 3872911
Alignment:
Q  1 aggaagcgagggaaagagtggcgtaagattgctcacattcctgccatagttatcgatgatgaattgatcacataagtttcatgtctaggtgagtct 96  Q
    ||||||||||||||  ||||| |||| ||||||||| | ||||||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||    
T  3872816 aggaagcgagggaagaagtggtgtaaaattgctcacgtgcctgccataattattgatgacgaactgatcacataagtttcatgtctaggtgagtct 3872911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 11494949 - 11494852
Alignment:
Q  1 aggaagcgagggaaagagtggcgtaagattgctcacattcctgccatagttatcgatgatgaattgatcacataagtttcatgtctaggtgagtctct 98  Q
    ||||||||||||||||| ||||||||||||||||| |||||  ||||| |||||||||| ||||||||||||| ||| || ||||  |||||||||||    
T  11494949 aggaagcgagggaaagaatggcgtaagattgctcatattccctccataattatcgatgacgaattgatcacatgagtatcttgtccgggtgagtctct 11494852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 11488707 - 11488628
Alignment:
Q  1 aggaagcgagggaaagagtggcgtaagattgctcacattcctgccatagttatcgatgatgaattgatcacataagtttc 80  Q
    ||||||| ||||||||||||| |||||||||||||||| |||| |||| |||| ||||||||||||||||||| ||||||    
T  11488707 aggaagcaagggaaagagtggagtaagattgctcacatacctgtcataattattgatgatgaattgatcacatgagtttc 11488628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 4 - 101
Target Start/End: Original strand, 10187407 - 10187504
Alignment:
Q  4 aagcgagggaaagagtggcgtaagattgctcacattcctgccatagttatcgatgatgaattgatcacataagtttcatgtctaggtgagtctctgaa 101  Q
    |||| |||||||||||||| |||||||  |||||| ||||||||| |||| |||||  |||| ||||||| |||||||| ||| ||||||||||||||    
T  10187407 aagcaagggaaagagtggcataagattcttcacatacctgccataattattgatgacaaattaatcacatgagtttcatatcttggtgagtctctgaa 10187504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 14 - 101
Target Start/End: Original strand, 10080441 - 10080528
Alignment:
Q  14 aagagtggcgtaagattgctcacattcctgccatagttatcgatgatgaattgatcacataagtttcatgtctaggtgagtctctgaa 101  Q
    |||||||||||||||||  |||||| ||||||||| |||| |||||  |||| ||||||| |||||||| ||| ||||||||||||||    
T  10080441 aagagtggcgtaagattcttcacatacctgccataattattgatgacaaattaatcacatgagtttcatatcttggtgagtctctgaa 10080528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 3 - 95
Target Start/End: Original strand, 4133017 - 4133109
Alignment:
Q  3 gaagcgagggaaagagtggcgtaagattgctcacattcctgccatagttatcgatgatgaattgatcacataagtttcatgtctaggtgagtc 95  Q
    |||||||||||||||||||||||||||||||||||||||  |  || ||||| |||   || ||||||||| ||| ||||||| |||||||||    
T  4133017 gaagcgagggaaagagtggcgtaagattgctcacattccatcggtacttatcaatggacaaatgatcacatgagtatcatgtcgaggtgagtc 4133109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 5968565 - 5968661
Alignment:
Q  1 aggaagcgagggaaagagtggcgtaagattgctcacattcctgccatagttatcgatgatgaattgatcacataagtttcatgtctaggtgagtctc 97  Q
    ||||||| |||||||||||||||||||||||||||||||||  | ||| ||||| | |||||| | ||||||| | ||||||||   ||||||||||    
T  5968565 aggaagcaagggaaagagtggcgtaagattgctcacattccgtctataattatcaacgatgaaataatcacatgattttcatgttcgggtgagtctc 5968661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 2922278 - 2922378
Alignment:
Q  1 aggaagcgagggaaagagtggcgtaagattgctcacattcctgccatagttatcgatgatgaattgatcacataagtttcatgtctaggtgagtctctga 100  Q
    ||||||| ||||||| |||||||||| ||||||||| |||   |||||||||||||||  ||| ||||||||| |||||| | | | |||||||| ||||    
T  2922278 aggaagcaagggaaaaagtggcgtaacattgctcacgttctctccatagttatcgatggcgaactgatcacatgagtttcctatttgggtgagtcactga 2922377  T
Q  101 a 101  Q
    |    
T  2922378 a 2922378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 4057558 - 4057518
Alignment:
Q  1 aggaagcgagggaaagagtggcgtaagattgctcacattcc 41  Q
    |||||||| ||||||||||||||||||||| ||||||||||    
T  4057558 aggaagcgtgggaaagagtggcgtaagatttctcacattcc 4057518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 17314507 - 17314586
Alignment:
Q  1 aggaagcgagggaaagagtggcgtaagattgctcacattcctgccatagttatcgatgatgaattgatcacataagtttc 80  Q
    ||||||||||| |||||||||||||||||||||||||||||  ||||| ||||||||||| | |||||||||| ||||||    
T  17314507 aggaagcgaggaaaagagtggcgtaagattgctcacattccctccataattatcgatgataatttgatcacatgagtttc 17314586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 16449535 - 16449597
Alignment:
Q  1 aggaagcgagggaaagagtggcgtaagattgctcacattcctgccatagttatcgatgatgaa 63  Q
    ||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||    
T  16449535 aggaagcgagggaaagagtggcgtaagattgctcatattccctccatagttatcgatgatgaa 16449597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 230 - 361
Target Start/End: Original strand, 16449770 - 16449900
Alignment:
Q  230 ttctgcttaatcttgctgttttgagaagccaaatctgcatgcacgaactgcaactaaatccagtaaatgttttactgagcaggaacagatggaatggaga 329  Q
    ||||||  ||| |||||||| ||||||| ||||| | |||| || | ||||||| || |||||| ||||||||||| | || ||||||||| || |||||    
T  16449770 ttctgcccaatattgctgttgtgagaagtcaaattttcatgtacaacctgcaaccaagtccagtcaatgttttactaatcatgaacagatgaaaaggaga 16449869  T
Q  330 aacaacaacttaccgcaaatatgttaggtact 361  Q
    |||||| || | ||||||||||||| ||||||    
T  16449870 aacaac-acctgccgcaaatatgtttggtact 16449900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 2192 - 2092
Alignment:
Q  1 aggaagcgagggaaagagtggcgtaagattgctcacattcctgccatagttatcgatgatgaattgatcacataagtttcatgtctaggtgagtctctga 100  Q
    ||||||| |||||||||||||||||||||||| ||||||||  ||||| |||| |||||||||||||| |||| |||||| | |   |||||||||||||    
T  2192 aggaagcaagggaaagagtggcgtaagattgcccacattccctccataattatagatgatgaattgataacatgagtttcctattcgggtgagtctctga 2093  T
Q  101 a 101  Q
    |    
T  2092 a 2092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 3 - 101
Target Start/End: Original strand, 18390803 - 18390898
Alignment:
Q  3 gaagcgagggaaagagtggcgtaagattgctcacattcctgccatagttatcgatgatgaattgatcacataagtttcatgtctaggtgagtctctgaa 101  Q
    |||||||||||||||||||| ||||||| ||||||||||   |||| ||||| | || |||||||||| |||| |||| ||||   |||||||||||||    
T  18390803 gaagcgagggaaagagtggcataagatttctcacattcccttcataattatcaacgacgaattgatcaaataactttcttgtc---gtgagtctctgaa 18390898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University