View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19486_low_19 (Length: 375)
Name: NF19486_low_19
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19486_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 49018163 - 49017794
Alignment:
| Q |
1 |
acgctgttcgtagatctttacataaattacgtcgaggatttaactcgaaatattcaaacaatcttttagaagggaagtcacgaacaactaaattgtccca |
100 |
Q |
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| T |
49018163 |
acgctgttcgtagatctttacataaattacgtcgaggatttaactcgaaatattcaaacaatcttttagaagggaagtcacgaacaactaaattgtccca |
49018064 |
T |
|
| Q |
101 |
caaatacttgtaacacattagttgaatcctcccatttctttcttgtgattctgcaggaactgtatctcagtaacgagtctttgtttcgactaacatcgga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49018063 |
caaatacttgtaacacattagttgaatcctcccatttcttttttgtgattctgcaggaactgtatctcagtaacgagtctttgtttcgactaacatcgga |
49017964 |
T |
|
| Q |
201 |
ttatgatcnnnnnnngccttaggcatccgaatttcatcaatctttaccaccatccatataccttgtgcaaaatcaaagcttattataggaagctcgcgag |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49017963 |
ttatgatctttttttgccttaggcatccgaatttcatcaatctttcccaccatccatataccttgtgcaaaatcaaagcttattataggaagctcgcgag |
49017864 |
T |
|
| Q |
301 |
ttagtccttcgaacaacagttgattcacaccattgatgaaatcaacaagtttcagtgccatatattcttc |
370 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
49017863 |
ttagtccttcgaacaacagttgattcacaccattgatgaaatcaacaagtttcagtgccatatagtcttc |
49017794 |
T |
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