View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19486_low_2 (Length: 631)
Name: NF19486_low_2
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19486_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 525; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 20 - 607
Target Start/End: Original strand, 40001121 - 40001711
Alignment:
| Q |
20 |
ccatcattcatcaaaaaatcactaatgatacaaagctatatagacttagaaacaacgtcaaaaacccatgatcaaatcattattcaaatgagtttttatt |
119 |
Q |
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| T |
40001121 |
ccatcattcatcaaaaaatcactaatgatacgaagctata--gatttagaaacaacgtcaaaaacccatggtcaaatcattattcaaatgagtttttatt |
40001218 |
T |
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| Q |
120 |
gaaaatccatctaataaacacatg-agtataattgaacctaattttgacaacatcatttagattaaggccacatgtata----aattgtgtttacaatta |
214 |
Q |
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| T |
40001219 |
gaaaatccatctaataaacacatggagtataattgaacctaattttgacaacatcatttagattaaggccacgtgtatatataaattgtgtttacaatta |
40001318 |
T |
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| Q |
215 |
tacaattgcacatgatcaatatacagaggatactttataactcacgagttcctttgagtttgagccaacagtagaatgcgattttttcttgggcgaagaa |
314 |
Q |
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| T |
40001319 |
tacaattggacatgatcaatagacagaggatactttataactcacgagttcctttgagtttgagccaacagtagaatgcgattttttcttgggcgaagaa |
40001418 |
T |
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| Q |
315 |
gagaatccattagagaattctgtaacagaattatatcttcgataatcaattttctctccataatcatcaactcttgaatgagaagcttgttctccatggt |
414 |
Q |
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| T |
40001419 |
gagaatacattagagaattctgtaacagaattatatcttcgataatcaattttctctccataatcatcaactcttgaatgagaagctggttctccatggt |
40001518 |
T |
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| Q |
415 |
aggtgtagtacccttgatcgatttcatggtaaaaatcgttgttacgtagagcacatcctgatgaaagacatttatattttctgcgactttttgtttttct |
514 |
Q |
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| T |
40001519 |
aggtgtagtacccttgatcgatttcatggtaaaaatcgttgttacgtagagcacatcctgatgaaagacatttatattttctgcgactttttgtttttct |
40001618 |
T |
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| Q |
515 |
tattactctgaaaatcataggcagaagaccctccataatatgtatcacaattcacaaccttaattccttcctttttgttcttgaagaataata |
607 |
Q |
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| T |
40001619 |
tattactctgaaaatcataggcagaagaccctccataatatgtatcacaattcacaaccttaattccttcctttttgttcttgaagaataata |
40001711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 294 - 431
Target Start/End: Original strand, 43103301 - 43103438
Alignment:
| Q |
294 |
gattttttcttgggcgaagaagagaatccattagagaattctgtaacagaattatatcttcgataatcaattttctctccataatcatcaactcttgaat |
393 |
Q |
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| T |
43103301 |
gatttttgcttaggtgaataagagaacccattagagaattccataacagaattatatcttcgataatcaattttgtctgcataatcatcaacccttgaat |
43103400 |
T |
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| Q |
394 |
gagaagcttgttctccatggtaggtgtagtacccttga |
431 |
Q |
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| T |
43103401 |
tagaagattgttctccatggtagttgtagtgcccttga |
43103438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 43103127 - 43103190
Alignment:
| Q |
129 |
tctaataaacacatg-agtataattgaacctaattttgacaacatcatttagattaaggccaca |
191 |
Q |
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| T |
43103127 |
tctaataaacacatggagtataattgaacctaatttatgcaacatcatttagatgaagtccaca |
43103190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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