View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19486_low_23 (Length: 349)
Name: NF19486_low_23
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19486_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 141; Significance: 7e-74; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 1148617 - 1148449
Alignment:
| Q |
1 |
catttaagcactcttagacattctcctctaatttcaaaattctaacggtctatggatagtttataacgtcgtgcataaatgaagcttttccaaagtttgg |
100 |
Q |
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| T |
1148617 |
catttaaacgctcttagacattctcctctagtttcaaaattctaaccgtctatggatagtttataacctcgtgcataaatgaagctttcccaaagtttgg |
1148518 |
T |
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| Q |
101 |
cgaaaataatgttgattgttgaataaggtaatggttgaaaatagagtatgtagatctatttagctatat |
169 |
Q |
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| T |
1148517 |
cgaaaataatgttgattgttgaataaggtaatggatgaaaatagagtatgtagatctatttagctatat |
1148449 |
T |
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Target: chr1; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 206 - 332
Target Start/End: Complemental strand, 1148411 - 1148285
Alignment:
| Q |
206 |
tataatatgggcattataataaagtcttacgtaattactaattaattaattgtttggcaatgagtttgaaacctaattaacggattgcattaacgtgttg |
305 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1148411 |
tataatatgggcattataataaagtcttacgtaattactaattaattaattgtttggcaatgagtttgaaacctaattaacggattgcattaacgtgttg |
1148312 |
T |
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| Q |
306 |
gtaatcgtatgccagctctatatgttc |
332 |
Q |
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| T |
1148311 |
gtaatcgtatgccagctctatatgttc |
1148285 |
T |
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