View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19486_low_24 (Length: 346)
Name: NF19486_low_24
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19486_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 15 - 337
Target Start/End: Complemental strand, 2575290 - 2574968
Alignment:
| Q |
15 |
ctagtggcttaaatatattatttttcttttcaaaagtctcattaaagacttattttattaaagtttataaatttcaaaattaatcaatctttgcaaaaat |
114 |
Q |
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| T |
2575290 |
ctagtggcttaaatatattatttttcttttcaaaagtctcattaaagacttattttattaaagtttataaatttcaaaattaattaatctttgcaaaaat |
2575191 |
T |
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| Q |
115 |
cagtatccacattcctttttccacaagtaaacatatgagctcattgataaagaacacgactcatgtgatttccttttataacaacatgtaataacaactc |
214 |
Q |
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| T |
2575190 |
cagtatccacattcctttttccacaagtaaacatatgagctcattgataaagaacacgactcatgtaatttccttttataacaaaatgtaataacaagtc |
2575091 |
T |
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| Q |
215 |
atagaagtgagattataacttttaataacgacaattgtaaagtcctttgaagtatgaacttaatgttccatacaaattatttaactagttcacttgtaat |
314 |
Q |
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| T |
2575090 |
atagaagtgagattataacttttaataacgacaatagtaaagtcctttgaagtatgaacttaatgttccatacaaattatttaactagttcacttgtcat |
2574991 |
T |
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| Q |
315 |
aactttagacgtgatatattctt |
337 |
Q |
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| T |
2574990 |
aactttagacgtgatattttctt |
2574968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 2565136 - 2565070
Alignment:
| Q |
255 |
agtcctttgaagtatgaacttaatgttccatacaaattatttaactagttcacttgtaataacttta |
321 |
Q |
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| T |
2565136 |
agtcttttgaagtatgaacctaatgttcctaacaaattatttaactagttcacttgtaataatttta |
2565070 |
T |
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