View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19486_low_27 (Length: 329)
Name: NF19486_low_27
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19486_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 2574853 - 2574535
Alignment:
| Q |
1 |
ttcaccaagcaaagctgcaacagaaccaacaaaagcagcattcatataggtggtaggttctgcatgagagtaatcagatcttgcatcattgtattggtca |
100 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2574853 |
ttcaccaagcaaagctgcaacagaacccacaaaagcagcattcatataggtggtaggttctgcatgagagtaatcagatcttgcatcattgtattggtca |
2574754 |
T |
|
| Q |
101 |
ttagaatttggtcctccaacaatagcacccacatgaatattaggatttggattagatgatgagaaatagttcgattggccatcattgcaacccactttgg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2574753 |
ttagaatttggtcctccaacaatagcacccacatgaatattaggatttggattagatgatgagaaatagttcgattggccatcattgcaacccactttgg |
2574654 |
T |
|
| Q |
201 |
tctggtgaactttgattgaagggatagaagaacctctgtgatgtaattgttttggatatttcctcccatatcccaccatatatgacatcttcatgggatt |
300 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2574653 |
tctggtgaactttgattgaagggatggaagaacctctgtgatgtaattgttttggatatttactcccatatcccaccatatatgacatcttcatgggatt |
2574554 |
T |
|
| Q |
301 |
gtttcctagtatgtagtcc |
319 |
Q |
| |
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||||||||||||||||||| |
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| T |
2574553 |
gtttcctagtatgtagtcc |
2574535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 5 - 319
Target Start/End: Complemental strand, 2564955 - 2564641
Alignment:
| Q |
5 |
ccaagcaaagctgcaacagaaccaacaaaagcagcattcatataggtggtaggttctgcatgagagtaatcagatcttgcatcattgtattggtcattag |
104 |
Q |
| |
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|||| ||||||||| |||||||| | ||||||||||||||||| || |||||||| | ||||||||||||||||||||||||||| ||||||||||| |
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| T |
2564955 |
ccaatcaaagctgcgacagaacctatgaaagcagcattcatataagtagtaggttcagaatgagagtaatcagatcttgcatcattaaattggtcattaa |
2564856 |
T |
|
| Q |
105 |
aatttggtcctccaacaatagcacccacatgaatattaggatttggattagatgatgagaaatagttcgattggccatcattgcaacccactttggtctg |
204 |
Q |
| |
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||| || |||||||| ||||||||||||||||||||||||||||||||||| || ||||||| | | | |||||||||||||||||||||||||| |
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| T |
2564855 |
aatcagggcctccaactatagcacccacatgaatattaggatttggattagaggaatagaaataatctgtgtaaccatcattgcaacccactttggtctg |
2564756 |
T |
|
| Q |
205 |
gtgaactttgattgaagggatagaagaacctctgtgatgtaattgttttggatatttcctcccatatcccaccatatatgacatcttcatgggattgttt |
304 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||||||||||||||| |
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| T |
2564755 |
gtgaactttgattgaagggatggaagaacctctgtgatgtaattgctttggatatttacttccatatcccaccatgtatgacatcttcatgggattgtta |
2564656 |
T |
|
| Q |
305 |
cctagtatgtagtcc |
319 |
Q |
| |
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||||||||||||||| |
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| T |
2564655 |
cctagtatgtagtcc |
2564641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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