View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19486_low_28 (Length: 324)
Name: NF19486_low_28
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19486_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 2497819 - 2498121
Alignment:
| Q |
1 |
aaaatatgtgatagtcatcaataataacatatgttgtacaatatcatttgtgaataaaacaaaaacgaacactaatagtgagctattgttggttcctaac |
100 |
Q |
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|||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2497819 |
aaaatatgcgatagtcatcaata---acatatgttgtacaatatcatttgtgaataaaacaaaaacgaacactaatagtgagctattgttggttcctaac |
2497915 |
T |
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| Q |
101 |
agatagtatccaaggaaatgagtcatttatcccaagaaaaccttcataacatgaggcctgcatatgagactgtaatcaagtgcattcttcaccataaatc |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2497916 |
agatagtatccaaggaaatgagtcatttatcccatgaaaaccttcataacatgaggcctgcatatgagactgtaatcaagtgcattcttcaccataaatc |
2498015 |
T |
|
| Q |
201 |
aatatgaattgaaattgttgaaaacataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaaggg |
300 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2498016 |
aatataaattgaaattgttgaaaacataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaaggg |
2498115 |
T |
|
| Q |
301 |
accaag |
306 |
Q |
| |
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|||||| |
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| T |
2498116 |
accaag |
2498121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 207 - 305
Target Start/End: Complemental strand, 1458895 - 1458797
Alignment:
| Q |
207 |
aattgaaattgttgaaaacataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaagggaccaa |
305 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| || ||||||||| |
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| T |
1458895 |
aattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgtatgctcaattttgaaaagtatttgagctgcagggaccaa |
1458797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 207 - 305
Target Start/End: Complemental strand, 2428602 - 2428504
Alignment:
| Q |
207 |
aattgaaattgttgaaaacataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaagggaccaa |
305 |
Q |
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|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||||||| || ||||||||| |
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| T |
2428602 |
aattgaaattgttgaatacataccgagaattccagtatagtaggaaagtgggacatctgtatgctcaattttgaaaagtatttgagctgcagggaccaa |
2428504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 207 - 306
Target Start/End: Original strand, 2517832 - 2517931
Alignment:
| Q |
207 |
aattgaaattgttgaaaacataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttgagatgaagggaccaag |
306 |
Q |
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|||||||||||||||| ||||||| || |||||||||||||| ||||| || ||||| ||||| |||||||||||||||||||||| || ||||| |||| |
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| T |
2517832 |
aattgaaattgttgaatacataccaagaattccagtatagtacgaaagaggaacatctgtgtgttcaattttgaaaagtatttgagctgcagggatcaag |
2517931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 207 - 290
Target Start/End: Original strand, 2513615 - 2513698
Alignment:
| Q |
207 |
aattgaaattgttgaaaacataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttg |
290 |
Q |
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|||||||||||| || ||||||| || ||||| |||||||||||||| || |||||||||||||||||||| ||| ||||||| |
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| T |
2513615 |
aattgaaattgtggatcacataccaagaattcctgtatagtaggaaagaggaacatcagtgtgctcaattttaaaatgtatttg |
2513698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 224 - 290
Target Start/End: Original strand, 2506972 - 2507038
Alignment:
| Q |
224 |
acataccgagtattccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaagtatttg |
290 |
Q |
| |
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||||||| || |||||||||||||||||||| || |||||||| ||||||||||||||| ||||||| |
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| T |
2506972 |
acatacctagaattccagtatagtaggaaagaggaacatcagtatgctcaattttgaaatgtatttg |
2507038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 235 - 283
Target Start/End: Complemental strand, 2434935 - 2434887
Alignment:
| Q |
235 |
attccagtatagtaggaaagtgggacatcagtgtgctcaattttgaaaa |
283 |
Q |
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||||| ||||| |||||||||||||||||| |||||||||||||||||| |
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| T |
2434935 |
attccggtataataggaaagtgggacatcattgtgctcaattttgaaaa |
2434887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 247 - 279
Target Start/End: Complemental strand, 2431538 - 2431506
Alignment:
| Q |
247 |
taggaaagtgggacatcagtgtgctcaattttg |
279 |
Q |
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|||||||||||||||||| |||||||||||||| |
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| T |
2431538 |
taggaaagtgggacatcattgtgctcaattttg |
2431506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 256 - 294
Target Start/End: Original strand, 50703456 - 50703494
Alignment:
| Q |
256 |
gggacatcagtgtgctcaattttgaaaagtatttgagat |
294 |
Q |
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| T |
50703456 |
gggacatcagtgtgctcaattttgaaaagtatttgagat |
50703494 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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