View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19486_low_42 (Length: 219)
Name: NF19486_low_42
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19486_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 41806282 - 41806486
Alignment:
| Q |
1 |
agtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatctttttcctgacttttctgtgctgcttgttttatctc |
100 |
Q |
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| T |
41806282 |
agtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatctttttcctgacttttctgtgctgcttgttttatctc |
41806381 |
T |
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| Q |
101 |
ttctggttcagaagagagaaacctacattttgtgtttgtctaatgatcaagtgaacttgcatggtattcaaagcaactcccatcgaatgcgacctgtgat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41806382 |
ttctggttcagaagagagaaacctacattttgtgtttgtctaatgatcaagtgaacttgcatggtattcaaagcaactcccatcgaatgcgacctgtgat |
41806481 |
T |
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| Q |
201 |
tcttg |
205 |
Q |
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||||| |
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| T |
41806482 |
tcttg |
41806486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 41800166 - 41800270
Alignment:
| Q |
11 |
atatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatc-tttttcctgacttttctgtgctgcttgttttatc-tcttctggtt |
108 |
Q |
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|||||||||||||| ||||||||||||| || ||||| || || ||||||||| |||||||||| ||||||||||| ||||||||||| |||||| ||| |
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| T |
41800166 |
atatttagaagattcacggcttgtgtttttctacctcgtttgagctcctacatcttttttcctgaattttctgtgcttcttgttttatcttcttctagtt |
41800265 |
T |
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| Q |
109 |
cagaa |
113 |
Q |
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||||| |
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| T |
41800266 |
cagaa |
41800270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 115 - 183
Target Start/End: Complemental strand, 42034154 - 42034087
Alignment:
| Q |
115 |
agagaaacctacattttgtgtttgtctaatgatcaagtgaacttgcatggtattcaaagcaactcccat |
183 |
Q |
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| T |
42034154 |
agagaaacctacatcttgtgtttgtctaatg-tcaagtgaacttgcttggcattcaaagcaactcccat |
42034087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 24631962 - 24632035
Alignment:
| Q |
1 |
agtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatctttttcctga |
74 |
Q |
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||||||||||||||||||||||||| ||||||| | |||| |||||||||||| |||| ||||||||||||| |
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| T |
24631962 |
agtaagtgaaatatttagaagatttgtggcttgtatctgtctacctcattcaagctcctggatctttttcctga |
24632035 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 24685348 - 24685444
Alignment:
| Q |
2 |
gtaagtgaaatatttagaagatttacggcttgtgtttgtcaacctcattcaagttcctacatctttttcctgacttttctgtgctgcttgttttatc |
98 |
Q |
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||||||| || |||||||||||| |||||| |||||||| |||||| || || ||||| |||||||||||| || ||| |||| || |||||||| |
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| T |
24685348 |
gtaagtgcaacatttagaagattcgcggcttttgtttgtctacctcagtcgagctcctaggtctttttcctgaattctctctgcttctggttttatc |
24685444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 43 - 113
Target Start/End: Complemental strand, 278464 - 278393
Alignment:
| Q |
43 |
acctcattcaagttcctacatctttttcctgacttttctgtgctgcttgttttat-ctcttctggttcagaa |
113 |
Q |
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|||||||| || ||||| ||||||||||||| ||||||||||| | ||||||| |||||||||||||||| |
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| T |
278464 |
acctcatttgagctcctagatctttttcctgaattttctgtgcttgtggttttatcctcttctggttcagaa |
278393 |
T |
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