View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19486_low_5 (Length: 546)

Name: NF19486_low_5
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19486_low_5
NF19486_low_5
[»] chr2 (3 HSPs)
chr2 (19-534)||(4242763-4243264)
chr2 (387-508)||(647269-647389)
chr2 (397-534)||(42703923-42704060)
[»] chr5 (7 HSPs)
chr5 (392-532)||(33496284-33496425)
chr5 (387-534)||(42577959-42578106)
chr5 (397-499)||(13093675-13093777)
chr5 (397-499)||(13022151-13022253)
chr5 (420-502)||(23150040-23150122)
chr5 (387-524)||(14277195-14277332)
chr5 (384-514)||(7273756-7273886)
[»] chr1 (9 HSPs)
chr1 (384-524)||(14647356-14647496)
chr1 (384-534)||(12459978-12460128)
chr1 (397-514)||(13189541-13189658)
chr1 (387-524)||(51492973-51493110)
chr1 (395-514)||(20128381-20128500)
chr1 (397-534)||(27644552-27644689)
chr1 (426-500)||(50181614-50181688)
chr1 (434-505)||(27465617-27465688)
chr1 (384-499)||(44138466-44138581)
[»] chr3 (7 HSPs)
chr3 (387-534)||(52966050-52966197)
chr3 (387-524)||(51141345-51141482)
chr3 (423-534)||(2500410-2500521)
chr3 (420-534)||(2332410-2332523)
chr3 (399-480)||(24596131-24596212)
chr3 (424-469)||(4755709-4755754)
chr3 (441-534)||(39695228-39695321)
[»] chr7 (8 HSPs)
chr7 (387-505)||(46598537-46598655)
chr7 (387-505)||(31801220-31801338)
chr7 (387-493)||(512590-512696)
chr7 (420-534)||(12351932-12352046)
chr7 (420-502)||(41146525-41146607)
chr7 (397-499)||(43968796-43968898)
chr7 (384-520)||(18222698-18222834)
chr7 (388-498)||(31402552-31402662)
[»] chr6 (3 HSPs)
chr6 (387-524)||(21731033-21731170)
chr6 (384-534)||(16861976-16862126)
chr6 (423-493)||(10160191-10160261)
[»] scaffold0703 (1 HSPs)
scaffold0703 (384-534)||(870-1020)
[»] chr4 (4 HSPs)
chr4 (387-514)||(54422625-54422752)
chr4 (420-502)||(32498317-32498399)
chr4 (387-464)||(29016903-29016980)
chr4 (418-499)||(43732685-43732766)
[»] chr8 (3 HSPs)
chr8 (423-493)||(9181967-9182037)
chr8 (423-493)||(11626236-11626306)
chr8 (394-493)||(29929639-29929738)
[»] scaffold0007 (1 HSPs)
scaffold0007 (423-505)||(189602-189684)
[»] scaffold0010 (1 HSPs)
scaffold0010 (384-532)||(237888-238036)


Alignment Details
Target: chr2 (Bit Score: 428; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 19 - 534
Target Start/End: Original strand, 4242763 - 4243264
Alignment:
Q  19 cagtggatgcaaataaagcaagagtactggaggtaaagggactacaatgggaagagcttcctggtagaaaaacatctgattctatgactaattaaatgac 118  Q
    ||||||||||||| |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4242763 cagtggatgcaaacaaagcaagagtactggaggtaaagtgactataatgggaagagcttcctggtagaaaaacatctgattctatgactaattaaatgac 4242862  T
Q  119 aacttattttcatttatatatgggattggaaagaaggaaattcaaggctggtgaaatcagtttgcttcaatatattaatattggaattaatttaatccat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4242863 aacttattttcatttatatatgggattggaaagaaggaaattcaaggctggtgaaatcagtttgcttcaatatattaatattggaattaatttaatccat 4242962  T
Q  219 attttaccctgattgaagttgagaggcaatcgaggtatttgtggtactgaggtttgatcttggttttgtgtatatgtatgtactcctaatatctctcaat 318  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4242963 attttaccctgattgaagttgagaggcaatcgaggtatttgtggtactgaggtttgatcttggttttgtgtatatgtatgtactcctaatatctctcagt 4243062  T
Q  319 gctatctgtaactaatgttacacattttattatcgattttatggctttataagattaaactgagttatttccctagacgggatttcttggatgcaccgat 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||             || |||    
T  4243063 gctatctgtaactaatgttacacattttattatcgattttatggctttataagattaaactgagttatttccctagacggg-------------actgat 4243149  T
Q  419 tggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaat 518  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||    
T  4243150 tggtcataatccaagctatacatggaggagtctatggagtactcaatctttgctcactttgggtcatagatggaa-attggagatggctcgaaaataaat 4243248  T
Q  519 gtatggaccatgcctt 534  Q
     |||||||||||||||    
T  4243249 ctatggaccatgcctt 4243264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 387 - 508
Target Start/End: Original strand, 647269 - 647389
Alignment:
Q  387 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 486  Q
    ||||||||||| ||||||||||| || ||  | || || || ||| |||| || ||||||||||||||||||||||||| ||| || || |||||  |||    
T  647269 ttccctagacgagatttcttggaggcccctctgggccacaacccaagctacacttggaggagtctatggagtactcaatctttacttacattgggatata 647368  T
Q  487 gatggaatattggagatggctc 508  Q
    ||||||| ||||| ||||||||    
T  647369 gatggaa-attggtgatggctc 647389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 397 - 534
Target Start/End: Complemental strand, 42704060 - 42703923
Alignment:
Q  397 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 496  Q
    ||||||||||||| |  || ||||| ||||||||| ||| ||| ||||| ||||| |||||||| ||| | ||||| || |||||||||| || ||| ||    
T  42704060 gggatttcttggaggtccctattggccataatccaagctttacttggagaagtctttggagtacccaacacttgcttacattgggtcatatattgaagat 42703961  T
Q  497 tggagatggctcaaaaataaatgtatggaccatgcctt 534  Q
    ||| |||||  | ||||| ||||| |||| ||||||||    
T  42703960 tggtgatggtgccaaaattaatgtgtggaacatgcctt 42703923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 90; Significance: 3e-43; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 392 - 532
Target Start/End: Complemental strand, 33496425 - 33496284
Alignment:
Q  392 tagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaa-tatttgctcactttgggtcatagatg 490  Q
    |||| ||||||| ||||| | ||||||||||||||||||| |||| ||||||||||||| ||||||||||||| ||||||||||||||||||||||||||    
T  33496425 tagatgggatttattggacgaaccgattggtcataatccaagctacacatggaggagtccatggagtactcaaatatttgctcactttgggtcatagatg 33496326  T
Q  491 gaatattggagatggctcaaaaataaatgtatggaccatgcc 532  Q
    ||| |||||||||||||| ||||||||| |||| ||||||||    
T  33496325 gaagattggagatggctcgaaaataaatctatgtaccatgcc 33496284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 387 - 534
Target Start/End: Complemental strand, 42578106 - 42577959
Alignment:
Q  387 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 486  Q
    ||||||||| |||||||||||||||| ||  |||| ||||||||| |||| |||||||||||||| ||||| ||||||| ||| || || ||||||||||    
T  42578106 ttccctagaagggatttcttggatgcccctcttggccataatccaagctacacatggaggagtctttggagcactcaatctttacttaccttgggtcata 42578007  T
Q  487 gatggaatattggagatggctcaaaaataaatgtatggaccatgcctt 534  Q
    ||||||| ||||||||||| ||||| |||||||||||| | |||||||    
T  42578006 gatggaagattggagatggttcaaacataaatgtatggtctatgcctt 42577959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 397 - 499
Target Start/End: Complemental strand, 13093777 - 13093675
Alignment:
Q  397 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 496  Q
    ||||||||||||||||  |  | |||||||||||| ||| ||| ||||||| ||| |||||||||||| ||||||| ||||||||| |||||||||| ||    
T  13093777 gggatttcttggatgcctccctcggtcataatccaagctttacttggaggaatctttggagtactcaacatttgcttactttgggttatagatggaaaat 13093678  T
Q  497 tgg 499  Q
    |||    
T  13093677 tgg 13093675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 499
Target Start/End: Complemental strand, 13022253 - 13022151
Alignment:
Q  397 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 496  Q
    ||||||||||||||||  |  | |||||||||||| ||| ||| ||||||| ||| |||||||||||| |||| || ||||||||| |||||||||| ||    
T  13022253 gggatttcttggatgcctccctcggtcataatccaagctttacttggaggaatctttggagtactcaacattttcttactttgggttatagatggaaaat 13022154  T
Q  497 tgg 499  Q
    |||    
T  13022153 tgg 13022151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 420 - 502
Target Start/End: Original strand, 23150040 - 23150122
Alignment:
Q  420 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggaga 502  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| ||||||||    
T  23150040 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggaga 23150122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 387 - 524
Target Start/End: Complemental strand, 14277332 - 14277195
Alignment:
Q  387 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 486  Q
    |||||| | ||||| ||||||||||  ||  |||||||||||||| |||| |   |||||||||| ||||||||||||| | ||   || ||||||||||    
T  14277332 ttcccttgtcgggacttcttggatgtccctcttggtcataatccaagctacatccggaggagtctttggagtactcaatctctgtatacattgggtcata 14277233  T
Q  487 gatggaatattggagatggctcaaaaataaatgtatgg 524  Q
    ||||||| |||||||  || |||||||||||| |||||    
T  14277232 gatggaagattggaggcggttcaaaaataaatttatgg 14277195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 384 - 514
Target Start/End: Original strand, 7273756 - 7273886
Alignment:
Q  384 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 483  Q
    ||||||||  || ||||||||||||||||  |  | || ||||||||| |||| |||||||| || || |||||||| ||| |||| || || |||||||    
T  7273756 tatttcccacgaagggatttcttggatgcctctctcggccataatccaagctacacatggagaagcctttggagtacacaacatttacttaccttgggtc 7273855  T
Q  484 atagatggaatattggagatggctcaaaaat 514  Q
    || ||||||| ||| ||||||| || |||||    
T  7273856 atggatggaagattagagatggttccaaaat 7273886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 77; Significance: 2e-35; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 384 - 524
Target Start/End: Original strand, 14647356 - 14647496
Alignment:
Q  384 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 483  Q
    ||||||||| | ||||| ||||||||||||||  ||| |||||||||| |||| | |||||||||||| ||||||||||||| | |||| || |||||||    
T  14647356 tatttccctcgtcgggacttcttggatgcacctcttgatcataatccaagctacatatggaggagtctttggagtactcaatctctgcttaccttgggtc 14647455  T
Q  484 atagatggaatattggagatggctcaaaaataaatgtatgg 524  Q
    |||||||||| ||||||||||| ||||||||||||||||||    
T  14647456 atagatggaaaattggagatggttcaaaaataaatgtatgg 14647496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 384 - 534
Target Start/End: Complemental strand, 12460128 - 12459978
Alignment:
Q  384 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 483  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||| |||||||| ||||  || || || |||||      
T  12460128 tatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctatacatggaggagtctttggagtacccaatcattacttacgttgggct 12460029  T
Q  484 atagatggaatattggagatggctcaaaaataaatgtatggaccatgcctt 534  Q
    |||||||||| |||||  ||||||||||||||||||| ||| | |||||||    
T  12460028 atagatggaagattggtaatggctcaaaaataaatgtgtggtcaatgcctt 12459978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 397 - 514
Target Start/End: Complemental strand, 13189658 - 13189541
Alignment:
Q  397 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 496  Q
    |||| |||||||||||||| ||||| ||||||||| |||| || ||||| ||||| |||||||||||| |||| || || |||||| |||||||||| ||    
T  13189658 gggacttcttggatgcacctattggccataatccaagctacacttggagaagtctttggagtactcaacatttacttaccttgggttatagatggaaaat 13189559  T
Q  497 tggagatggctcaaaaat 514  Q
    |||||||||||| |||||    
T  13189558 tggagatggctctaaaat 13189541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 387 - 524
Target Start/End: Complemental strand, 51493110 - 51492973
Alignment:
Q  387 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 486  Q
    |||||||||  ||||||||||||||| ||  |||| ||||||||| ||||  |||||||| |||| ||||| ||||||| ||| || || ||||||||||    
T  51493110 ttccctagaatggatttcttggatgcccctcttggccataatccaagctacgcatggaggggtctttggagcactcaatctttacttaccttgggtcata 51493011  T
Q  487 gatggaatattggagatggctcaaaaataaatgtatgg 524  Q
    ||||||| ||||||| ||| ||||| ||||||||||||    
T  51493010 gatggaagattggagctggttcaaacataaatgtatgg 51492973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 395 - 514
Target Start/End: Original strand, 20128381 - 20128500
Alignment:
Q  395 acgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaat 494  Q
    ||||||||||||||| |||||  |||||||||||||| |||| || |||||||||||||||||||| |||| | | || || ||||| |||||||||||     
T  20128381 acgggatttcttggaagcacctcttggtcataatccaagctacacttggaggagtctatggagtacccaatctcttcttaccttgggacatagatggaag 20128480  T
Q  495 attggagatggctcaaaaat 514  Q
    ||||| |||||| |||||||    
T  20128481 attggtgatggcacaaaaat 20128500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 397 - 534
Target Start/End: Complemental strand, 27644689 - 27644552
Alignment:
Q  397 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 496  Q
    ||||||||||||||||  |  |||||||||||||| ||||||| ||||||||||| |||||||| ||  | ||||| || || || || || ||||| ||    
T  27644689 gggatttcttggatgcctctcttggtcataatccaagctatacttggaggagtctttggagtacccagcacttgcttaccttaggacacaggtggaagat 27644590  T
Q  497 tggagatggctcaaaaataaatgtatggaccatgcctt 534  Q
    |||| |||| || ||||||||||| ||||| |||||||    
T  27644589 tggaaatggttccaaaataaatgtgtggactatgcctt 27644552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 426 - 500
Target Start/End: Original strand, 50181614 - 50181688
Alignment:
Q  426 aatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattgga 500  Q
    |||||| | |||||||||||||||||||||||||| |||| ||| || || || || ||||||||||| ||||||    
T  50181614 aatccaagttatacatggaggagtctatggagtacgcaatctttacttaccttaggccatagatggaagattgga 50181688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 434 - 505
Target Start/End: Original strand, 27465617 - 27465688
Alignment:
Q  434 ctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatgg 505  Q
    |||||| |||| |||||||||||||||||||| ||| || | ||||||||||  |||||| ||||| |||||    
T  27465617 ctatacttggaagagtctatggagtactcaatctttacttattttgggtcatgaatggaaaattggtgatgg 27465688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 384 - 499
Target Start/End: Original strand, 44138466 - 44138581
Alignment:
Q  384 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 483  Q
    ||||||||  || |||||||||||||||| ||  | || ||||||||| |||| || ||||| || ||||||||| | ||| |||| || || ||||| |    
T  44138466 tatttcccgcgaagggatttcttggatgcccctctcggccataatccaagctacacctggagaagcctatggagtgcacaacatttacttaccttgggac 44138565  T
Q  484 atagatggaatattgg 499  Q
    |||||||||| |||||    
T  44138566 atagatggaagattgg 44138581  T

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Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 387 - 534
Target Start/End: Complemental strand, 52966197 - 52966050
Alignment:
Q  387 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 486  Q
    ||||||||| |||||||||||||||| ||  |||| ||||||||| |||| |||||||||||||| ||||| ||||||| ||| || || ||||||||||    
T  52966197 ttccctagaagggatttcttggatgcccctcttggccataatccaagctacacatggaggagtctttggagcactcaatctttacttaccttgggtcata 52966098  T
Q  487 gatggaatattggagatggctcaaaaataaatgtatggaccatgcctt 534  Q
    ||||||| ||||||||||| ||||| |||||||||||| | |||||||    
T  52966097 gatggaagattggagatggttcaaacataaatgtatggtctatgcctt 52966050  T

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Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 387 - 524
Target Start/End: Complemental strand, 51141482 - 51141345
Alignment:
Q  387 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 486  Q
    |||||| | ||||| ||||||||||| || ||||||||||||||| | || |||||||| | ||| ||||||||||||||| |||| || ||||||||||    
T  51141482 ttccctcgtcgggacttcttggatgcccctattggtcataatccaagttacacatggagaattctttggagtactcaatatctgcttaccttgggtcata 51141383  T
Q  487 gatggaatattggagatggctcaaaaataaatgtatgg 524  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  51141382 gatggaagattggagatggttcaaaaataaatgtatgg 51141345  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 423 - 534
Target Start/End: Complemental strand, 2500521 - 2500410
Alignment:
Q  423 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatgtat 522  Q
    ||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| |||||  |||| ||||| |    
T  2500521 cataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggagacggctctcaaattaatgtgt 2500422  T
Q  523 ggaccatgcctt 534  Q
    |||  |||||||    
T  2500421 ggagtatgcctt 2500410  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 420 - 534
Target Start/End: Original strand, 2332410 - 2332523
Alignment:
Q  420 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 519  Q
    |||||||||||| ||||||| ||||||||||| ||||||||| || |||| || || |||  | |||||||||| ||||| |||||||| ||||| ||||    
T  2332410 ggtcataatccaagctatacttggaggagtctttggagtact-aacatttacttaccttgtattatagatggaaaattggtgatggctctaaaattaatg 2332508  T
Q  520 tatggaccatgcctt 534  Q
    | ||||  |||||||    
T  2332509 tgtggaaaatgcctt 2332523  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 399 - 480
Target Start/End: Complemental strand, 24596212 - 24596131
Alignment:
Q  399 gatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgg 480  Q
    |||||||||||||||||  ||||||| |||||| |||| |||||||||||||| |||||| | |||| ||| || |||||||    
T  24596212 gatttcttggatgcaccttttggtcacaatccaagctacacatggaggagtctttggagtgcccaatctttacttactttgg 24596131  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 469
Target Start/End: Complemental strand, 4755754 - 4755709
Alignment:
Q  424 ataatccatgctatacatggaggagtctatggagtactcaatattt 469  Q
    |||||||| ||||||||||||||||||| |||||||| ||| ||||    
T  4755754 ataatccaagctatacatggaggagtctttggagtacccaaaattt 4755709  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 534
Target Start/End: Complemental strand, 39695321 - 39695228
Alignment:
Q  441 tggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatgtatggaccatgcctt 534  Q
    ||||||||||| |||||||||||| | |  || | ||||||||||| |||||| ||||| || ||||| ||||| ||||| || | ||||||||    
T  39695321 tggaggagtctttggagtactcaacaatgacttattttgggtcatatatggaagattggtgacggctctaaaattaatgtgtgaaacatgcctt 39695228  T

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Target: chr7 (Bit Score: 63; Significance: 4e-27; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 387 - 505
Target Start/End: Original strand, 46598537 - 46598655
Alignment:
Q  387 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 486  Q
    |||||||||||||| |||||||||||| |  | |||||||||||| ||||||| ||||||||  ||||||||||||||| ||| || |||||||| ||||    
T  46598537 ttccctagacgggacttcttggatgcaaccctcggtcataatccaagctatacctggaggagcttatggagtactcaatctttacttactttgggccata 46598636  T
Q  487 gatggaatattggagatgg 505  Q
    ||||||| |||||||||||    
T  46598637 gatggaagattggagatgg 46598655  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 387 - 505
Target Start/End: Original strand, 31801220 - 31801338
Alignment:
Q  387 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 486  Q
    |||||||||| ||| |||||||||||  |  | |||||||||||| ||||||| ||||||||  ||||||||||||||| ||| || |||||||| ||||    
T  31801220 ttccctagactggacttcttggatgctaccctcggtcataatccaagctatacttggaggagcttatggagtactcaatctttacttactttgggccata 31801319  T
Q  487 gatggaatattggagatgg 505  Q
    ||||||| |||||||||||    
T  31801320 gatggaagattggagatgg 31801338  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 387 - 493
Target Start/End: Original strand, 512590 - 512696
Alignment:
Q  387 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 486  Q
    |||||||||||||| |||||||||||| |  | |||||||||||| ||||||| || |||||  ||||||||||||||| ||| || |||||||| ||||    
T  512590 ttccctagacgggacttcttggatgcaaccctcggtcataatccaagctatacctgaaggagcttatggagtactcaatctttacttactttgggccata 512689  T
Q  487 gatggaa 493  Q
    |||||||    
T  512690 gatggaa 512696  T

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Target: chr7; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 420 - 534
Target Start/End: Complemental strand, 12352046 - 12351932
Alignment:
Q  420 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatggctcaaaaataaatg 519  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| |||||||| |||||  |||| ||||    
T  12352046 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccatagctggaaaattggagacggctctcaaattaatg 12351947  T
Q  520 tatggaccatgcctt 534  Q
    | ||||  |||||||    
T  12351946 tgtggagtatgcctt 12351932  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 420 - 502
Target Start/End: Original strand, 41146525 - 41146607
Alignment:
Q  420 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggaga 502  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| ||||||||    
T  41146525 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggaga 41146607  T

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Target: chr7; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 397 - 499
Target Start/End: Original strand, 43968796 - 43968898
Alignment:
Q  397 gggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatat 496  Q
    ||||||||||||||||  |  | |||||||||||| ||| ||| || |||||||| |||||||||||| ||||||| ||||||||| ||| |||||| ||    
T  43968796 gggatttcttggatgcctccctcggtcataatccaagctttacttgaaggagtctttggagtactcaacatttgcttactttgggttatatatggaaaat 43968895  T
Q  497 tgg 499  Q
    |||    
T  43968896 tgg 43968898  T

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Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 384 - 520
Target Start/End: Complemental strand, 18222834 - 18222698
Alignment:
Q  384 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 483  Q
    ||||||||  || ||||||||||||||||  |  | || ||||||||| ||||||| ||||||||||| ||||||| |||||  || || || ||||| |    
T  18222834 tatttcccgcgaagggatttcttggatgcctctctcggccataatccaagctatacttggaggagtctttggagtattcaatcattacttaccttggggc 18222735  T
Q  484 atagatggaatattggagatggctcaaaaataaatgt 520  Q
    |||||||||| |||||||| ||  | |||||||||||    
T  18222734 atagatggaagattggagacggtactaaaataaatgt 18222698  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 498
Target Start/End: Original strand, 31402552 - 31402662
Alignment:
Q  388 tccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatag 487  Q
    |||||||| ||||| ||| |||||||   ||||||||||||||| ||| ||||||||||||  | |||||| | ||| |  |  ||||||||||| ||||    
T  31402552 tccctagaagggatatctcggatgcaaatattggtcataatccaagctttacatggaggagcatttggagttcccaaaaccttatcactttgggttatag 31402651  T
Q  488 atggaatattg 498  Q
    |||||| ||||    
T  31402652 atggaagattg 31402662  T

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Target: chr6 (Bit Score: 62; Significance: 2e-26; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 387 - 524
Target Start/End: Complemental strand, 21731170 - 21731033
Alignment:
Q  387 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 486  Q
    |||||| | ||||| ||||||||||||||  |||||||||||||| |||| | |||||||||||| ||||||||||||| | | || || ||||| ||||    
T  21731170 ttccctcgtcgggacttcttggatgcacctcttggtcataatccaagctacatatggaggagtctttggagtactcaatctcttcttaccttgggccata 21731071  T
Q  487 gatggaatattggagatggctcaaaaataaatgtatgg 524  Q
    ||||||| ||| |||| || ||||||||||||||||||    
T  21731070 gatggaaaattagagacggttcaaaaataaatgtatgg 21731033  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 384 - 534
Target Start/End: Original strand, 16861976 - 16862126
Alignment:
Q  384 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 483  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||||| |||| |||||||||||||| |||||||  ||||  || || || |||||      
T  16861976 tatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctacacatggaggagtctttggagtaaccaatcattacttacgttgggct 16862075  T
Q  484 atagatggaatattggagatggctcaaaaataaatgtatggaccatgcctt 534  Q
    |||||||||| |||||  |||| ||||| |||||||| ||| | |||||||    
T  16862076 atagatggaagattggtaatggttcaaatataaatgtgtggccaatgcctt 16862126  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 423 - 493
Target Start/End: Complemental strand, 10160261 - 10160191
Alignment:
Q  423 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 493  Q
    ||||||||| | |||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||    
T  10160261 cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa 10160191  T

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Target: scaffold0703 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0703
Description:

Target: scaffold0703; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 384 - 534
Target Start/End: Complemental strand, 1020 - 870
Alignment:
Q  384 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 483  Q
    ||||||||| |||||||||||||||| |||||  |||||||||||||| ||||||||||||||||||| |||||||  ||||  || || || |||||      
T  1020 tatttccctcgacgggatttcttggaagcacctcttggtcataatccaagctatacatggaggagtctttggagtatccaatcattacttacgttgggct 921  T
Q  484 atagatggaatattggagatggctcaaaaataaatgtatggaccatgcctt 534  Q
    |||||||||| |||||  |||| ||||| |||||||| ||| | |||||||    
T  920 atagatggaagattggtaatggttcaaatataaatgtgtggtcaatgcctt 870  T

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Target: chr4 (Bit Score: 44; Significance: 9e-16; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 387 - 514
Target Start/End: Complemental strand, 54422752 - 54422625
Alignment:
Q  387 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcata 486  Q
    ||||| || |||||||||||||| ||||   ||||||| |||||| |||| || || ||||||||||||||| | |||| | |||| || ||||| ||||    
T  54422752 ttcccgaggcgggatttcttggaagcacgtcttggtcacaatccaagctacacttgaaggagtctatggagtgcccaatctctgcttaccttggggcata 54422653  T
Q  487 gatggaatattggagatggctcaaaaat 514  Q
    ||||||| || || ||||||||||||||    
T  54422652 gatggaagatcggtgatggctcaaaaat 54422625  T

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Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 420 - 502
Target Start/End: Original strand, 32498317 - 32498399
Alignment:
Q  420 ggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggaga 502  Q
    |||||||||||| | || |||||||||||||||||||||||||||| ||| || || ||||| ||||| ||||| ||||||||    
T  32498317 ggtcataatccaagttacacatggaggagtctatggagtactcaatctttacttaccttgggccataggtggaaaattggaga 32498399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 387 - 464
Target Start/End: Original strand, 29016903 - 29016980
Alignment:
Q  387 ttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaa 464  Q
    ||||||||| |||||||||||||| | |  |||||||| |||||| ||||||| ||||||||  |||||||| |||||    
T  29016903 ttccctagaagggatttcttggattcccgtattggtcacaatccaagctatacttggaggagcatatggagttctcaa 29016980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 418 - 499
Target Start/End: Original strand, 43732685 - 43732766
Alignment:
Q  418 ttggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattgg 499  Q
    |||||||||||||| |||| || ||||| ||||| |||||| | ||| | ||  | |||||||||||||||||||| |||||    
T  43732685 ttggtcataatccaagctacacttggagaagtctttggagtgcccaacacttagttactttgggtcatagatggaagattgg 43732766  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 423 - 493
Target Start/End: Complemental strand, 9182037 - 9181967
Alignment:
Q  423 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 493  Q
    ||||||||| | |||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||    
T  9182037 cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa 9181967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 423 - 493
Target Start/End: Original strand, 11626236 - 11626306
Alignment:
Q  423 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 493  Q
    ||||||||| | |||||||||||||||||||||||||| |||| ||| || || |||||||||||||||||    
T  11626236 cataatccaagttatacatggaggagtctatggagtacacaatctttacttaccttgggtcatagatggaa 11626306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 493
Target Start/End: Complemental strand, 29929738 - 29929639
Alignment:
Q  394 gacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaa 493  Q
    |||||||||||||||| |  ||  |||||||||||||| || | || || |||||||| |||||||   || | ||||| ||||||||||||||||||||    
T  29929738 gacgggatttcttggacgaccctcttggtcataatccaagcaacacttgcaggagtctttggagtatctaacacttgcttactttgggtcatagatggaa 29929639  T

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Target: scaffold0007 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 423 - 505
Target Start/End: Complemental strand, 189684 - 189602
Alignment:
Q  423 cataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtcatagatggaatattggagatgg 505  Q
    ||||||||| | | ||||||||||||||| | ||||||||||| ||| ||||| ||||| ||||||||||  ||||| |||||    
T  189684 cataatccaagttttacatggaggagtcttttgagtactcaatctttactcaccttgggacatagatggatgattggtgatgg 189602  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 384 - 532
Target Start/End: Complemental strand, 238036 - 237888
Alignment:
Q  384 tatttccctagacgggatttcttggatgcaccgattggtcataatccatgctatacatggaggagtctatggagtactcaatatttgctcactttgggtc 483  Q
    ||||||||| | |||||||||||||||||    ||||| || |||||| |||  || ||||||||  |||||||| |||||| | | || || |||||      
T  238036 tatttccctcgtcgggatttcttggatgccaatattggccacaatccaagcttcacttggaggagcatatggagttctcaatctcttctaaccttgggct 237937  T
Q  484 atagatggaatattggagatggctcaaaaataaatgtatggaccatgcc 532  Q
    |||||||||| ||||| || || || ||||| ||||| ||| |||||||    
T  237936 atagatggaagattggtgacggttcgaaaatcaatgtttggtccatgcc 237888  T

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