View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19486_low_7 (Length: 504)
Name: NF19486_low_7
Description: NF19486
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19486_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 1 - 488
Target Start/End: Original strand, 35680519 - 35681006
Alignment:
| Q |
1 |
agtagaaatcaagcacctgtactcttgaacacaccaagtccccctgatgttgtaaggaatagaccagggcctttggaaatcaaagaagaacgtgacacac |
100 |
Q |
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| T |
35680519 |
agtagaaatcaagcacctgtactcttgaacacaccaagtccccctgatgttgtaaggaatagaccagggcctttggaaatcaaagaagaacgtgacacac |
35680618 |
T |
|
| Q |
101 |
ttgtacaattaaaggacaaattactccgccatttgccgttagatgttacacaacaacacttccaattaattccaatccctcccattacaacagtgattac |
200 |
Q |
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| T |
35680619 |
ttgtacaattaaaggacaaattactccgccatttgccgttaaatgttacacaacaacacttccaattaattccaatccctcccattacaacagtgattag |
35680718 |
T |
|
| Q |
201 |
attaatcttgtgaattcaatggtctcatcagttgatacctttcctagtcaatccaaaagcgtcatgccgaatgatcaatcttttgatatcagtttcactt |
300 |
Q |
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| T |
35680719 |
attaatcttgtgaattcaatggtgtcatcagttgatacctttcctagtcagtccaaaagcgtcatgtcgaatgatcaatcttttgatatcagtttcactt |
35680818 |
T |
|
| Q |
301 |
caaatttgagttgtggtgtcatggccaaacctccaaagccgccagtacggaacgatggtcaatcaaaattctctcggtataataccattagctataaagg |
400 |
Q |
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| T |
35680819 |
caaatttgagttgtggtgtcatggccaaacctccaaagccgccagtacggaacgatggtcaatcaaaattctctcggtataataccattagctataaagg |
35680918 |
T |
|
| Q |
401 |
acgaagtcgatcaaacattcatttgcaattgctggtggtgctcgtgacacaagggcaatgctgaatcgcgccggtgaagggttgtcgt |
488 |
Q |
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| T |
35680919 |
acgaagtcgatcaaacattcatttccaattgctggtggtgctcgtgacacaagggcaatgctgaatcgcgccggtgaagggttgtcgt |
35681006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 80 - 343
Target Start/End: Original strand, 26375963 - 26376242
Alignment:
| Q |
80 |
tcaaagaagaacgtgacacacttgtacaattaaaggacaaattactccgccatttgccgttagatgttacacaacaacacttccaa-------------- |
165 |
Q |
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||||||||||| |||||||||||||||||||||||||||| ||| ||||||||| ||| ||||||||||||||||||||||| |
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| T |
26375963 |
tcaaagaagaatgtgacacacttgtacaattaaaggacaat---ctcatccatttgccattaaatgttacacaacaacacttccaaatttaccaatcaat |
26376059 |
T |
|
| Q |
166 |
-----ttaattccaatccctcccattacaacagtgattacattaatcttgtgaattcaatggtctcatcagttgatacctttcctagtcaatccaaaagc |
260 |
Q |
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| T |
26376060 |
ttcaattaattctaatccctctcattacaacagtgattacattagttctgtgaattcaatgatgtcttcagatgataccttttctagtccgtccaaaagc |
26376159 |
T |
|
| Q |
261 |
gtcatgccgaatgatcaatcttttgatatcagtttcacttcaaatttgagttgtggtgtcatggccaaacctccaaagccgcc |
343 |
Q |
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| T |
26376160 |
ctcatgttgaatgatcaatcttctgatatcattttcactccaaacttgagttgtggtgtaatggccaaacctccaaaaccgcc |
26376242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 163 - 261
Target Start/End: Original strand, 34318036 - 34318134
Alignment:
| Q |
163 |
caattaattccaatccctcccattacaacagtgattacattaatcttgtgaattcaatggtctcatcagttgatacctttcctagtcaatccaaaagcg |
261 |
Q |
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|||||||||||||||||||| |||||| ||||||||||||| | ||||||||||| ||| || ||||||||||||||||||||||| |||||||||| |
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| T |
34318036 |
caattaattccaatccctccggttacaaaagtgattacattagacctgtgaattcaacggtgtcttcagttgatacctttcctagtcagtccaaaagcg |
34318134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 84 - 165
Target Start/End: Original strand, 34317941 - 34318019
Alignment:
| Q |
84 |
agaagaacgtgacacacttgtacaattaaaggacaaattactccgccatttgccgttagatgttacacaacaacacttccaa |
165 |
Q |
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| T |
34317941 |
agaagaacttaacacacttgtacaattaaaggataat---ctcagccatttgccattaaatgttacacagcaacacttccaa |
34318019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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