View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19487_high_10 (Length: 395)
Name: NF19487_high_10
Description: NF19487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19487_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 13 - 377
Target Start/End: Complemental strand, 46740087 - 46739723
Alignment:
| Q |
13 |
aaaatggaatggggtggaaaattcagaaaaaggcaaaaattgaggaaccaacaaacaagatttttccttnnnnnnncaaagattttaaaatgaggatcaa |
112 |
Q |
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| T |
46740087 |
aaaatggaatggggtggaaaattcagaaaaaggaaaaaattgaggaaccaaaaaagaagatttttccttaaaaaaacaaagattttaaaatgaggatcaa |
46739988 |
T |
|
| Q |
113 |
aatttcattttttgaaaataatgatatcaaacatggatttaannnnnnnctttcgaataaaatatattgcagtgttttcactaatttatagtgtttttat |
212 |
Q |
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| T |
46739987 |
aatttcattttttgaaaataatgatatcaaaca-ggatttaatttttttcattcgaataaaatatattgtagtgttttcactaatttatagtgtttttat |
46739889 |
T |
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| Q |
213 |
gtactactaaaagtagtatttaattttaaagttaaatctatttttcgtatctatacaatatttagtattttagtttactccnnnnnnnnttatctatttt |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
46739888 |
atactactaaaagtagtatttaattttaaagttaaatctatttttcgtatctatacaatatttagtattttagtttagtccaaaaaaaattatctatttt |
46739789 |
T |
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| Q |
313 |
taatctctaccttttat-aaaaaatacggtgctttctgaaagtttatcttccaaataagcgatttc |
377 |
Q |
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|| |||||||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||| |
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| T |
46739788 |
tagtctctaccttttataaaaaaatatggtgctttctgaaaatttatcttccaaatgagcgatttc |
46739723 |
T |
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