View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19487_high_13 (Length: 299)
Name: NF19487_high_13
Description: NF19487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19487_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 33442785 - 33442493
Alignment:
| Q |
12 |
ataaaaaataaaattgctatatttatctacgagaagcaacatatgaacaagagaaggttcaagcctcatggctattgcaaaagttggaactatta----- |
106 |
Q |
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| T |
33442785 |
ataaaaaataaaattgctatatttatctacgagaagcaacatatgaacaagagaaggttcaagcttcatggctattgcaaaaattgaaactattaccgta |
33442686 |
T |
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| Q |
107 |
-----------tttacaattacaatattacgttatttcttatcttagtctgaatacgatattataatttgtagttaaatcaaattaatattcaaattctt |
195 |
Q |
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| T |
33442685 |
cctcaacattatttccaattacaatattacgttatttcttatcttagtctaaatacgatattataatttgtagttaaatcaaattaatattcaaattctt |
33442586 |
T |
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| Q |
196 |
gtaaccnnnnnnnntaaattaatattcaaattctgccaagccgtccttagccgtttgtgacaatccccttaacctgaaattttatgtgtatata |
289 |
Q |
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| T |
33442585 |
gtaacc-aaaaaaataaattaatattcaaattctgccaagccgtccttagccgtttgtgacaatccccttgccctgaaattatatgtgtatata |
33442493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 211 - 289
Target Start/End: Complemental strand, 33452829 - 33452749
Alignment:
| Q |
211 |
aaattaatattcaaattctgccaagccgtccttagccgtttgtgacaat--ccccttaacctgaaattttatgtgtatata |
289 |
Q |
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| T |
33452829 |
aaattaatattcaaattctgccaagccgtccatagccgtttgttgcaatcccccctcaccctgatattttatgtgtatata |
33452749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 33452880 - 33452811
Alignment:
| Q |
123 |
tacgttatttcttatcttagtctgaatacgatattataatttgtagttaaatcaaattaatattcaaattct |
194 |
Q |
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| T |
33452880 |
tacgttatttcttatca-agtctgcatgcaatattata-tttgtggttaaatcaaattaatattcaaattct |
33452811 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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