View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19487_high_16 (Length: 249)
Name: NF19487_high_16
Description: NF19487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19487_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 33442336 - 33442104
Alignment:
| Q |
1 |
tgatgaaaagggttggactactttgtttgattaccaaacttggaccgcaaacaaggtctttcgtctcggggacacactcagtaagctcatttccatttgt |
100 |
Q |
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| T |
33442336 |
tgatgaaaagggttggactactttgtttgattaccaaacttggaccgcaaacaaggtctttcgtctcggggacacactcagtaagctcatttccatttgt |
33442237 |
T |
|
| Q |
101 |
atattctttcattatctctaatttcattgctaagaaaaactaaaattggtgattaatttcattgcagcattcaattatgttggtggcaaagacaatgttg |
200 |
Q |
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| T |
33442236 |
atattctttcattatctctaatttcattgctaagaaaaactaaaattggtgattaatttcattgcagcattcaattatgttggtggcaaagacaatgttg |
33442137 |
T |
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| Q |
201 |
tgagagtgaatggaagtgacttcaagagttgct |
233 |
Q |
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| T |
33442136 |
tgagagtgaatggaagtgacttcaagagttgct |
33442104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 2 - 124
Target Start/End: Complemental strand, 33452585 - 33452463
Alignment:
| Q |
2 |
gatgaaaagggttggactactttgtttgattaccaaacttggaccgcaaacaaggtctttcgtctcggggacacactcagtaagctcatttccatttgta |
101 |
Q |
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| T |
33452585 |
gatgaaaagggttggactactttgtttgattaccaaacttggaccgcaaacaaggtctttcgtctcggggacacactcagtaagctcatttccatttgta |
33452486 |
T |
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| Q |
102 |
tattctttcattatctctaattt |
124 |
Q |
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| T |
33452485 |
tattctttcgttatctctaattt |
33452463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 33452395 - 33452324
Alignment:
| Q |
162 |
ttgcagcattcaattatgttggtggcaaagacaatgttgtgagagtgaatggaagtgacttcaagagttgct |
233 |
Q |
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| T |
33452395 |
ttgcagcattcaattatgttggtggcaaagacaatgttgtgagagtgaatggaagtgacttcaagagttgct |
33452324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 33395972 - 33395901
Alignment:
| Q |
162 |
ttgcagcattcaattatgttggtggcaaagacaatgttgtgagagtgaatggaagtgacttcaagagttgct |
233 |
Q |
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| T |
33395972 |
ttgcagcattcaactatgttggtggtaaggacaatgtggtgagagtgaatggaagtgatttccagagttgct |
33395901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 33400095 - 33400031
Alignment:
| Q |
27 |
ttgattaccaaacttggaccgcaaacaaggtctttcgtctcggggacacactcagtaagctcatt |
91 |
Q |
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| T |
33400095 |
ttgattaccaagcttgggctgcaaacaaggtctttcgtctcggagacacactcagtaacctcatt |
33400031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 162 - 233
Target Start/End: Complemental strand, 33399859 - 33399788
Alignment:
| Q |
162 |
ttgcagcattcaattatgttggtggcaaagacaatgttgtgagagtgaatggaagtgacttcaagagttgct |
233 |
Q |
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||||||||||||| ||||||| | | || |||||||| |||||||||||||||||||| ||| ||||||||| |
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| T |
33399859 |
ttgcagcattcaagtatgttgcttggaaggacaatgtggtgagagtgaatggaagtgatttccagagttgct |
33399788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 47 - 91
Target Start/End: Complemental strand, 33396990 - 33396946
Alignment:
| Q |
47 |
gcaaacaaggtctttcgtctcggggacacactcagtaagctcatt |
91 |
Q |
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|||||||| ||||||||| | |||||||||||||||||||||||| |
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| T |
33396990 |
gcaaacaaagtctttcgtgtaggggacacactcagtaagctcatt |
33396946 |
T |
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