View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19487_high_2 (Length: 711)

Name: NF19487_high_2
Description: NF19487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19487_high_2
NF19487_high_2
[»] chr7 (13 HSPs)
chr7 (353-695)||(5773990-5774332)
chr7 (7-352)||(5774916-5775261)
chr7 (8-96)||(41553470-41553559)
chr7 (8-96)||(41553815-41553904)
chr7 (8-96)||(41554160-41554249)
chr7 (8-93)||(24069430-24069516)
chr7 (8-80)||(969483-969556)
chr7 (8-96)||(3224446-3224535)
chr7 (37-96)||(1749217-1749276)
chr7 (8-96)||(27997057-27997146)
chr7 (32-96)||(28476189-28476253)
chr7 (39-96)||(24350909-24350966)
chr7 (21-96)||(30756869-30756941)
[»] chr4 (15 HSPs)
chr4 (8-96)||(51888247-51888336)
chr4 (21-96)||(22300833-22300908)
chr4 (21-92)||(37683878-37683949)
chr4 (8-96)||(9643372-9643461)
chr4 (8-96)||(52944295-52944384)
chr4 (8-93)||(28857389-28857475)
chr4 (21-96)||(26633721-26633793)
chr4 (8-96)||(12199729-12199815)
chr4 (49-96)||(19853587-19853634)
chr4 (37-96)||(27651924-27651983)
chr4 (27-77)||(43853445-43853495)
chr4 (27-93)||(52934000-52934066)
chr4 (8-77)||(9145918-9145992)
chr4 (21-96)||(33921038-33921110)
chr4 (59-96)||(35395758-35395795)
[»] chr8 (14 HSPs)
chr8 (11-96)||(8443548-8443634)
chr8 (8-96)||(1239431-1239519)
chr8 (8-96)||(8826178-8826266)
chr8 (12-78)||(29617312-29617379)
chr8 (21-96)||(34609799-34609874)
chr8 (21-96)||(3673410-3673482)
chr8 (12-96)||(5333395-5333480)
chr8 (8-96)||(24099289-24099378)
chr8 (21-96)||(28086861-28086933)
chr8 (8-96)||(1236731-1236819)
chr8 (21-76)||(33342448-33342503)
chr8 (8-94)||(15344277-15344363)
chr8 (8-94)||(15433342-15433428)
chr8 (8-94)||(15524646-15524732)
[»] chr5 (13 HSPs)
chr5 (21-86)||(19120886-19120951)
chr5 (8-79)||(10332584-10332656)
chr5 (8-77)||(8088248-8088317)
chr5 (12-77)||(19349679-19349745)
chr5 (21-96)||(31391803-31391875)
chr5 (30-96)||(38597763-38597826)
chr5 (8-78)||(16758521-16758592)
chr5 (21-96)||(35921046-35921121)
chr5 (27-88)||(37986169-37986227)
chr5 (12-86)||(38110988-38111063)
chr5 (21-76)||(42886484-42886539)
chr5 (21-96)||(11073950-11074022)
chr5 (24-93)||(26510696-26510765)
[»] chr2 (16 HSPs)
chr2 (8-96)||(29574665-29574754)
chr2 (21-96)||(19062403-19062475)
chr2 (21-93)||(12647971-12648043)
chr2 (117-236)||(30400188-30400308)
chr2 (21-96)||(37994253-37994328)
chr2 (10-96)||(10929638-10929726)
chr2 (8-96)||(32448656-32448744)
chr2 (52-96)||(38445143-38445187)
chr2 (21-64)||(22538343-22538386)
chr2 (49-96)||(27097482-27097529)
chr2 (57-96)||(29173803-29173842)
chr2 (21-94)||(37876657-37876727)
chr2 (28-94)||(6358931-6358997)
chr2 (32-96)||(7677935-7677996)
chr2 (12-96)||(34128725-34128810)
chr2 (21-96)||(36943172-36943244)
[»] scaffold0347 (1 HSPs)
scaffold0347 (8-96)||(5994-6083)
[»] chr3 (19 HSPs)
chr3 (8-96)||(12947310-12947399)
chr3 (8-96)||(53807894-53807982)
chr3 (12-93)||(29239309-29239391)
chr3 (21-96)||(40487291-40487364)
chr3 (28-94)||(25842641-25842707)
chr3 (8-96)||(35175367-35175456)
chr3 (21-96)||(36461481-36461553)
chr3 (28-77)||(41818194-41818243)
chr3 (21-96)||(43488640-43488712)
chr3 (116-164)||(20465119-20465167)
chr3 (116-164)||(51303789-51303837)
chr3 (37-96)||(7546573-7546632)
chr3 (116-199)||(29921910-29921992)
chr3 (116-199)||(29971063-29971145)
chr3 (30-96)||(25461060-25461126)
chr3 (21-96)||(9998433-9998505)
chr3 (21-96)||(10108202-10108274)
chr3 (21-96)||(10233036-10233108)
chr3 (39-80)||(42460725-42460766)
[»] chr1 (14 HSPs)
chr1 (8-96)||(47132870-47132959)
chr1 (8-77)||(24582937-24583006)
chr1 (123-251)||(34413247-34413376)
chr1 (8-92)||(41994398-41994483)
chr1 (8-96)||(19060877-19060965)
chr1 (8-96)||(44543240-44543328)
chr1 (116-223)||(45415395-45415502)
chr1 (34-93)||(32679158-32679217)
chr1 (8-94)||(43412343-43412430)
chr1 (52-94)||(10776539-10776581)
chr1 (8-96)||(9341694-9341783)
chr1 (39-96)||(16161801-16161858)
chr1 (21-96)||(35484441-35484513)
chr1 (8-77)||(49626900-49626969)
[»] chr6 (13 HSPs)
chr6 (21-88)||(31296793-31296860)
chr6 (21-73)||(30140575-30140627)
chr6 (8-93)||(26588508-26588594)
chr6 (21-96)||(13546713-13546785)
chr6 (32-96)||(8102687-8102751)
chr6 (6-80)||(1933726-1933801)
chr6 (21-94)||(29319928-29319998)
chr6 (8-93)||(28981145-28981231)
chr6 (8-93)||(30493500-30493586)
chr6 (59-96)||(127638-127675)
chr6 (39-96)||(1523369-1523426)
chr6 (8-96)||(7976213-7976302)
chr6 (21-96)||(33053218-33053290)
[»] scaffold0039 (1 HSPs)
scaffold0039 (8-96)||(93070-93160)
[»] scaffold0445 (1 HSPs)
scaffold0445 (21-93)||(1314-1383)


Alignment Details
Target: chr7 (Bit Score: 298; Significance: 1e-167; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 353 - 695
Target Start/End: Complemental strand, 5774332 - 5773990
Alignment:
Q  353 ataggatgtaaggtcattattcagttcccttgctattacattatatattagtaattagttgcgaaatcacgagtcttttactaattgatcnnnnnnncct 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||       |||    
T  5774332 ataggatgtaaggtcattattcagttcccttgctattacattatatattagtaattagttgcgaaatcacgggtcttttactaattgctcaaaaaaacct 5774233  T
Q  453 cgtctttggccgatgtggtggcgggcagactaaacctttagcattgggtccacaagaagcacaacatgagcatatgtgcttattgtcaagagtagtgtca 552  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5774232 cgtctttggccgatgtggcggcgggcagactaaacctttagcattgggtccacaagaagcacaacatgagcatatgtgcttattgtcaagagtagtgtca 5774133  T
Q  553 catctacaaccgtaaggttggctgcctgatccaaaagactgcacaaattcatgttcacatgagtttttagaacagtcgccattgtttgtcagatcttgga 652  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5774132 catctacaaccgtaaggttggctgcctgatccaaaagactccacaaattcttgttcacatgagtttttagaacagtcgccgttgtttgtcagatcttgga 5774033  T
Q  653 aacaaaatttggctacaaaacaagatcaaatcatttcacatat 695  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  5774032 aacaaaatttggctacaaaacaagatcaaatcatttcacatat 5773990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 7 - 352
Target Start/End: Complemental strand, 5775261 - 5774916
Alignment:
Q  7 gatatgaaccaaacaacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacgacgaaatcatg 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  5775261 gatatgaaccaaacaacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgccgcactcagacgacgacgaaatcatg 5775162  T
Q  107 nnnnnnnnncttgatatatgtgaaaatcacttatttgtat-taaacaaaaggggaaaaatagatggtgaggcgtgatttgag--atcaaaaaatgatata 203  Q
             ||||||||||||| ||||||||||||| |||  ||| ||| |||| ||||||||||| |||| ||||||  ||  |  ||||||||| |||    
T  5775161 aaaaaa---cttgatatatgtggaaatcacttatttatatcaaaagaaaggggggaaaatagatggagaggggtgattctaggtaaaaaaaaatgacata 5775065  T
Q  204 caaccacctcttctcgataagtgaaggaaaaaagaacttggagagaagttggaatattttgaatggggtggagccgttgaaatcatatcatataatgaca 303  Q
     || ||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  5775064 aaatcacatcttctctataagtgaaagaaaaaagaacttggagagaagttggaatattttgaatgaggtggagccgttgaaatcatatcatataatgaca 5774965  T
Q  304 ataatggtgagttatggtctcctaaaaatgtgattcattcaaatacatc 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5774964 ataatggtgagttatggtctcctaaaaatgtgattcattcaaatacatc 5774916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 41553470 - 41553559
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||||||| |||||   |||||||||||||||||||||| | | || ||||||| ||||||||||||| ||||||||| ||||||    
T  41553470 atatgaaccaaacgaacaccataacaagacgcgaaatcaaataacgtcacacaagacgacgaacaacacaacgttgcactcaggcgacga 41553559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 41553815 - 41553904
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||||||| |||||   |||||||||||||||||||||| | | || ||||||| ||||||||||||| ||||||||| ||||||    
T  41553815 atatgaaccaaacgaacaccataacaagacgcgaaatcaaataacgtcacacaagacgacgaacaacacaacgttgcactcaggcgacga 41553904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 41554160 - 41554249
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||||||| |||||   |||||||||||||||||||||| | | || ||||||| ||||||||||||| ||||||||| ||||||    
T  41554160 atatgaaccaaacgaacaccataacaagacgcgaaatcaaataacgtcacacaagacgacgaacaacacaacgttgcactcaggcgacga 41554249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 24069430 - 24069516
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacga 93  Q
    ||||||| ||||| ||||| ||||||| |||| |||||||| || |||||| ||||| | |||||||||||||| ||||||||||||    
T  24069430 atatgaatcaaacgaacaccgcaacaatacgccaaatcaaaaaacgccgcacaagacaacgaacaacacaacgccgcactcagacga 24069516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 969483 - 969556
Alignment:
Q  8 atatgaaccaaacaa-cactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgc 80  Q
    ||||||||||||||| ||| |||| ||||||| |||||||| || |||||| ||||||| ||||||||||||||    
T  969483 atatgaaccaaacaaacaccgcaataagacgcaaaatcaaacaacgccgcaaaagacgacgaacaacacaacgc 969556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 3224446 - 3224535
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||||||| ||||  ||||||| ||| |||||||||||||| |||| ||||| | |||||||||||| | || ||||||||||||    
T  3224446 atatgaaccaaacgaacatcgcaacaaaacgtgaaatcaaataatgtcgcacaagactacgaacaacacaacacagccctcagacgacga 3224535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 1749217 - 1749276
Alignment:
Q  37 gcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||||| ||||||||| ||||||| |||||||||||||  ||||| |||||||||    
T  1749217 gcgaaatcaaacaatgccgcacaagacgacgaacaacacaacgtcgcactaagacgacga 1749276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 27997146 - 27997057
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||| ||||| ||||||||||||||| || |||| ||| ||||  ||| |||| || ||||||||||| || |||||||||||||||    
T  27997146 atatgaatcaaacgaacactgcaacaagatgcaaaataaaacaatgttgcacaagatgacgaacaacacaatgccgcactcagacgacga 27997057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 28476253 - 28476189
Alignment:
Q  32 aagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||| ||||||||||| || |||||| ||||||| |||||||||||||  ||||| |||||||||    
T  28476253 aagatgcgaaatcaaacaacgccgcacaagacgacgaacaacacaacgtcgcactaagacgacga 28476189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 24350909 - 24350966
Alignment:
Q  39 gaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||| || |||||| ||||||| |||||||||||||  ||||| |||||||||    
T  24350909 gaaatcaaacaacgccgcacaagacgacgaacaacacaacgtcgcactaagacgacga 24350966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 30756869 - 30756941
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||| || |||| |||||||||||||    |||||| ||||||| |||||||||||||| ||||| |||||||||    
T  30756869 aacaccgcgacaaaacgcgaaatcaaac---gccgcacaagacgacgaacaacacaacgccgcacttagacgacga 30756941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 1e-21; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 51888247 - 51888336
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||||||| ||||| ||||||||| ||||||||||| || | ||||||||||||||||||||||||||| |||||||||| ||||    
T  51888247 atatgaaccaaacgaacaccgcaacaagatgcgaaatcaaacaacgtcgcataagacgatgaacaacacaacgccgcactcagacaacga 51888336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 22300908 - 22300833
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||| |||||| |||||||||||||| || |||||| ||||||| |||||||||||||  |||| ||||||||||    
T  22300908 aacaccgcaacaggacgcgaaatcaaacaacgccgcacaagacgacgaacaacacaacgtcgcacacagacgacga 22300833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 92
Target Start/End: Complemental strand, 37683949 - 37683878
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacg 92  Q
    ||||| ||||||||||||||||||||| ||  |  || |||||||||||||||||||||| |||||||||||    
T  37683949 aacaccgcaacaagacgcgaaatcaaacaactctacacaagacgatgaacaacacaacgccgcactcagacg 37683878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 9643461 - 9643372
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||||||| ||||||||||||||| | ||||||||| || | |||  ||||||| |||||||||||||  |||||| ||||||||    
T  9643461 atatgaaccaaacgaacactgcaacaagatgagaaatcaaacaacgtcgctcaagacgacgaacaacacaacgtcgcactcggacgacga 9643372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 52944384 - 52944295
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||| ||||| ||||| |||||||||||| |||| ||| || |||||| || |||| |||||||||||||| |||||||||| ||||    
T  52944384 atatgaaacaaacgaacaccgcaacaagacgcaaaattaaacaacgccgcacaaaacgacgaacaacacaacgccgcactcagactacga 52944295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 28857475 - 28857389
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacga 93  Q
    ||||||| ||||| ||||| ||||| ||||||| ||||||| || |||||| ||||| | |||||||||||||| ||||| ||||||    
T  28857475 atatgaaacaaacgaacaccgcaactagacgcggaatcaaacaacgccgcacaagacaacgaacaacacaacgccgcacttagacga 28857389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 26633721 - 26633793
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||||||| |||||||||||| || |||   |||||| ||||||| |||||||||||||| ||||| |||||||||    
T  26633721 aacactgcgacaagacgcgaagtccaat---gccgcacaagacgacgaacaacacaacgccgcacttagacgacga 26633793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 12199729 - 12199815
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||||||| |||| ||||| |||||||||||| ||||||||    || ||| || |||||||||||||||||||  ||||||||||||||    
T  12199729 atatgaactaaacgaacaccgcaacaagacgcaaaatcaaaa---gctgcacaaaacgatgaacaacacaacgccacactcagacgacga 12199815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 19853587 - 19853634
Alignment:
Q  49 aatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||||| |||||||||| |||||||||||||| ||||| |||||||||    
T  19853587 aatgccacataagacgacgaacaacacaacgccgcacttagacgacga 19853634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 27651983 - 27651924
Alignment:
Q  37 gcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||||| ||  ||||| ||||||| ||||||||||||| |||||| |||||||||    
T  27651983 gcgaaatcaaacaacaccgcacaagacgacgaacaacacaacgttgcactaagacgacga 27651924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 43853495 - 43853445
Alignment:
Q  27 gcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaa 77  Q
    ||||||| ||||||||||||| || |||||| |||| ||||||||||||||    
T  43853495 gcaacaatacgcgaaatcaaacaacgccgcacaagatgatgaacaacacaa 43853445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 27 - 93
Target Start/End: Original strand, 52934000 - 52934066
Alignment:
Q  27 gcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacga 93  Q
    ||||||||| ||||||||||| || || ||| || | || |||||||||||||| ||||||||||||    
T  52934000 gcaacaagatgcgaaatcaaacaacgctgcacaaaatgacgaacaacacaacgccgcactcagacga 52934066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 9145918 - 9145992
Alignment:
Q  8 atatgaaccaaacaa-cactgcaacaagacg----cgaaatcaaataatgccgcataagacgatgaacaacacaa 77  Q
    ||||||||||||||| ||| ||||||||| |    |||||||||| ||||||||| ||||||| |||||||||||    
T  9145918 atatgaaccaaacaaacaccgcaacaagatgaaaacgaaatcaaacaatgccgcacaagacgacgaacaacacaa 9145992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 33921110 - 33921038
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||||||| |||||||| |||||||||    | |||||||||||  |||||||||||||| ||||| |||||||||    
T  33921110 aacactgcgacaagacgtgaaatcaaac---gtcgcataagacggcgaacaacacaacgccgcacttagacgacga 33921038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Original strand, 35395758 - 35395795
Alignment:
Q  59 aagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  35395758 aagacgacgaacaacacaacgccgcactcagacgacga 35395795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 2e-17; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 11 - 96
Target Start/End: Original strand, 8443548 - 8443634
Alignment:
Q  11 tgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||||||||| ||||||||||||||||||| ||||||| || |||||| ||||||| |||||||||||| | ||||| |||||||||    
T  8443548 tgaaccaaacgaacactgcaacaagacgcggaatcaaacaacgccgcacaagacgacgaacaacacaacaccgcacttagacgacga 8443634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 1239431 - 1239519
Alignment:
Q  8 atatgaaccaaacaacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||||||||||  ||||| ||||||||| || |||||||| || |||||| ||||||||||||||||||| |  ||||| |||||||||    
T  1239431 atatgaaccaacgaacaccgcaacaagatgccaaatcaaacaacgccgcacaagacgatgaacaacacaaggtcgcacttagacgacga 1239519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 8826266 - 8826178
Alignment:
Q  8 atatgaaccaaacaacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||| |||| ||||| |||||||||| |||| ||| | || ||| || ||||||| |||||||| |||||||||||||||||||||    
T  8826266 atatgaatcaaagaacaccgcaacaagacacgaattcacacaacgccacacaagacgacgaacaacataacgctgcactcagacgacga 8826178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 12 - 78
Target Start/End: Original strand, 29617312 - 29617379
Alignment:
Q  12 gaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaac 78  Q
    ||||||||| ||||| ||||||||||||||||||||| |  |||||| ||||||| ||||||||||||    
T  29617312 gaaccaaacgaacaccgcaacaagacgcgaaatcaaacagcgccgcacaagacgacgaacaacacaac 29617379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 34609874 - 34609799
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||| |||||||||| | ||||||||||| | |||| ||||||| ||||||| |||||| ||||| |||||||||    
T  34609874 aacaccgcaacaagacacaaaatcaaataacgtcgcacaagacgaggaacaacccaacgccgcacttagacgacga 34609799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 3673482 - 3673410
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||| |||||||||| |||||||||| |   ||||||||||||| |||||||||||| | ||||| |||||||||    
T  3673482 aacaccgcaacaagacacgaaatcaaaca---ccgcataagacgacgaacaacacaacaccgcacttagacgacga 3673410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 12 - 96
Target Start/End: Complemental strand, 5333480 - 5333395
Alignment:
Q  12 gaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||| ||||| | |||||||||| |||||||| ||  ||||| ||||||| |||||||||||| | ||||||||| |||||    
T  5333480 gaaccaaacgaacaccggaacaagacgcaaaatcaaacaacaccgcacaagacgacgaacaacacaacaccgcactcagatgacga 5333395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 24099289 - 24099378
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||||||  ||||| ||||||||| ||||||||||| || || | | | ||||| |||||||||||||  |||||||||||||||    
T  24099289 atatgaaccaaatgaacaccgcaacaagatgcgaaatcaaacaacgcggtacaggacgacgaacaacacaacgtcgcactcagacgacga 24099378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 28086861 - 28086933
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||||||| ||||||||||||||||   ||||| ||| |||| || |||||||||||||| ||||| |||||||||    
T  28086861 aacactgcgacaagacgcgaaatca---aatgctgcacaagatgacgaacaacacaacgcagcacttagacgacga 28086933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 1236731 - 1236819
Alignment:
Q  8 atatgaaccaaacaacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||||||||||  ||||| ||||||||| || |||||||| || |||||| ||||| | ||||||||||| |  ||||| |||||||||    
T  1236731 atatgaaccaacgaacaccgcaacaagatgccaaatcaaacaacgccgcacaagacaacgaacaacacaaggtcgcacttagacgacga 1236819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 33342503 - 33342448
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacaca 76  Q
    ||||| ||||||| ||| ||||||||| || |||||||||||||| ||||||||||    
T  33342503 aacaccgcaacaatacgggaaatcaaaaaacgccgcataagacgaagaacaacaca 33342448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 15344363 - 15344277
Alignment:
Q  8 atatgaaccaaacaacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgac 94  Q
    |||||||||||  ||||| ||||||||| |  ||||||||  | |||||| ||||||| ||||||||||| | |||||| |||||||    
T  15344363 atatgaaccaacgaacaccgcaacaagatgtcaaatcaaactacgccgcacaagacgacgaacaacacaaggttgcacttagacgac 15344277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 15433428 - 15433342
Alignment:
Q  8 atatgaaccaaacaacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgac 94  Q
    |||||||||||  ||||| ||||||||| |  ||||||||  | |||||| ||||||| ||||||||||| | |||||| |||||||    
T  15433428 atatgaaccaacgaacaccgcaacaagatgtcaaatcaaactacgccgcacaagacgacgaacaacacaaggttgcacttagacgac 15433342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 15524732 - 15524646
Alignment:
Q  8 atatgaaccaaacaacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgac 94  Q
    |||||||||||  ||||| ||||||||| |  ||||||||  | |||||| ||||||| ||||||||||| | |||||| |||||||    
T  15524732 atatgaaccaacgaacaccgcaacaagatgtcaaatcaaactacgccgcacaagacgacgaacaacacaaggttgcacttagacgac 15524646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 7e-17; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 21 - 86
Target Start/End: Complemental strand, 19120951 - 19120886
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcact 86  Q
    ||||| ||||||||||||||||||||| |||||| |||||||||| |||||||||||||| |||||    
T  19120951 aacaccgcaacaagacgcgaaatcaaacaatgcctcataagacgacgaacaacacaacgccgcact 19120886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 10332584 - 10332656
Alignment:
Q  8 atatgaaccaaacaa-cactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacg 79  Q
    ||||||| ||||||| ||||||||||||||||||||||||| ||||||||| |||||||  ||||||||||||    
T  10332584 atatgaatcaaacaaacactgcaacaagacgcgaaatcaaacaatgccgcacaagacgacaaacaacacaacg 10332656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 8 - 77
Target Start/End: Original strand, 8088248 - 8088317
Alignment:
Q  8 atatgaaccaaacaacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaa 77  Q
    |||||||||||  ||||||||||||||| || |||||||| || |||||| |||||||| ||||||||||    
T  8088248 atatgaaccaacgaacactgcaacaagatgccaaatcaaacaacgccgcacaagacgataaacaacacaa 8088317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 19349745 - 19349679
Alignment:
Q  12 gaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaa 77  Q
    ||||||||| |||| |||||| ||||| |||||||||||| |||||| ||||||| |||||||||||    
T  19349745 gaaccaaacgaacattgcaactagacgtgaaatcaaataacgccgcacaagacgacgaacaacacaa 19349679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 31391803 - 31391875
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||||||| |||||| ||||||||||||   |||||| ||||||| |||||||||||||  ||||| |||||||||    
T  31391803 aacactgcgacaagatgcgaaatcaaat---gccgcacaagacgaagaacaacacaacgtcgcacttagacgacga 31391875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 30 - 96
Target Start/End: Complemental strand, 38597826 - 38597763
Alignment:
Q  30 acaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||||||||||||    |||||| ||||||| |||||||||||||| ||||| |||||||||    
T  38597826 acaagacgcgaaatcaaac---gccgcacaagacgacgaacaacacaacgccgcacttagacgacga 38597763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 78
Target Start/End: Complemental strand, 16758592 - 16758521
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaac 78  Q
    ||||||||||||| ||||| | ||||| ||||||||||||||||  ||||| | |||||| |||||||||||    
T  16758592 atatgaaccaaacgaacaccgtaacaaaacgcgaaatcaaataagaccgcacacgacgataaacaacacaac 16758521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 35921046 - 35921121
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||| ||||||||||||||||||||| || | | |||||||||| |||||| | || |  |||||||||||||||    
T  35921046 aacaccgcaacaagacgcgaaatcaaacaacgtctcataagacgacgaacaatataatgtcgcactcagacgacga 35921121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 88
Target Start/End: Original strand, 37986169 - 37986227
Alignment:
Q  27 gcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactca 88  Q
    ||||||||| |||||||||||    |||||| |||||||||||||||||||||| |||||||    
T  37986169 gcaacaagatgcgaaatcaaac---gccgcacaagacgatgaacaacacaacgccgcactca 37986227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 12 - 86
Target Start/End: Original strand, 38110988 - 38111063
Alignment:
Q  12 gaaccaaacaa-cactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcact 86  Q
    ||||||||||| |||||||||||||| | |||||||| || |||||| ||||| |  ||||||||||| |||||||    
T  38110988 gaaccaaacaaacactgcaacaagacacaaaatcaaacaacgccgcacaagacaacaaacaacacaacactgcact 38111063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 42886539 - 42886484
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacaca 76  Q
    |||||||||||||| || ||||||||| || |||||| ||||||| ||||||||||    
T  42886539 aacactgcaacaaggcgggaaatcaaacaacgccgcacaagacgacgaacaacaca 42886484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 11073950 - 11074022
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||| || ||||||||||||||||||    |||||| ||||||| |||||| ||||||||||||| |||| ||||    
T  11073950 aacaccgcgacaagacgcgaaatcaaac---gccgcacaagacgacgaacaaaacaacgctgcacttagacaacga 11074022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 26510696 - 26510765
Alignment:
Q  24 actgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacga 93  Q
    ||||||||||||||| |||||||| || | |||| |||| || ||| ||||||||||| |||| ||||||    
T  26510696 actgcaacaagacgcaaaatcaaacaacgacgcacaagatgacgaataacacaacgctacacttagacga 26510765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 29574665 - 29574754
Alignment:
Q  8 atatgaaccaaacaa-cactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||| ||||||| ||||||||||| | | ||||||||| ||||||||| ||||||| |||||||||||||| |||||| ||||||||    
T  29574665 atatgaatcaaacaaacactgcaacaaaatgtgaaatcaaacaatgccgcacaagacgacgaacaacacaacgccgcactcggacgacga 29574754  T

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Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 19062403 - 19062475
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||||||  |||||||| ||||||||||   |||||| ||||||| |||||||||||||||||||| |||||||||    
T  19062403 aacactgtgacaagacgtgaaatcaaat---gccgcacaagacgacgaacaacacaacgctgcacttagacgacga 19062475  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 12647971 - 12648043
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacga 93  Q
    ||||| ||||||||||| ||||||||| || |||||| ||||||| |||||||||||| | ||||| ||||||    
T  12647971 aacaccgcaacaagacgagaaatcaaacaacgccgcacaagacgacgaacaacacaacaccgcacttagacga 12648043  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 236
Target Start/End: Original strand, 30400188 - 30400308
Alignment:
Q  117 ttgatatatgtgaaaatcacttatttgtattaaacaaaaggggaaaaatagatggtga-ggcgtgatttgagatcaaaaaatgatatacaaccacctctt 215  Q
    |||||||||||||||| |||||||||  ||||||  |||  | ||||| |||||  || || ||||||| || |||||||||||| || |||||||||||    
T  30400188 ttgatatatgtgaaaaacacttatttagattaaaagaaaaagaaaaaaaagatgtagatggagtgattttaggtcaaaaaatgatctaaaaccacctctt 30400287  T
Q  216 ctcgataagtgaaggaaaaaa 236  Q
    |||||| | ||||||| ||||    
T  30400288 ctcgatgaatgaaggagaaaa 30400308  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 37994328 - 37994253
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||||||||| || |||||||| ||||||| | | || || |||||||||||||| |||||||||| ||||    
T  37994328 aacactgcaacaagatgcaaaatcaaacaatgccgtacaggaagacgaacaacacaacgccgcactcagacaacga 37994253  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 10 - 96
Target Start/End: Complemental strand, 10929726 - 10929638
Alignment:
Q  10 atgaaccaaac-aacactgcaacaagacgcgaaatcaaat-aatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||||| ||||| |||||||||||| ||||||||  || | || | ||||||| |||||||||||| | |||||||||||||||    
T  10929726 atgaaccaaacgaacaccgcaacaagacgctaaatcaaaacaacgtcgtacaagacgacgaacaacacaacaccgcactcagacgacga 10929638  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 32448656 - 32448744
Alignment:
Q  8 atatgaaccaaacaacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||||||||||  ||||| ||||||||| || |||||||| || | |||| ||||||| ||||||||||| |  ||||| |||||||||    
T  32448656 atatgaaccaacgaacaccgcaacaagatgccaaatcaaacaacggcgcacaagacgacgaacaacacaaggtcgcacttagacgacga 32448744  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 96
Target Start/End: Complemental strand, 38445187 - 38445143
Alignment:
Q  52 gccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||||| ||||||| |||||||||||||||||||| |||||||||    
T  38445187 gccgcacaagacgacgaacaacacaacgctgcacttagacgacga 38445143  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 22538343 - 22538386
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacg 64  Q
    |||||||||||||||| | |||||||||||||||||| ||||||    
T  22538343 aacactgcaacaagactcaaaatcaaataatgccgcacaagacg 22538386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 96
Target Start/End: Original strand, 27097482 - 27097529
Alignment:
Q  49 aatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||| ||||||| |||||||||||||| ||||| |||||||||    
T  27097482 aatgccgcacaagacgacgaacaacacaacgccgcacttagacgacga 27097529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 96
Target Start/End: Original strand, 29173803 - 29173842
Alignment:
Q  57 ataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||||||||||||||||||||||| ||||| |||||||||    
T  29173803 ataagacgatgaacaacacaacgccgcacttagacgacga 29173842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 37876657 - 37876727
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgac 94  Q
    ||||| || ||||||||||||||||   ||||||||| ||||||| |||||||| ||||| ||||| |||||||    
T  37876657 aacaccgcgacaagacgcgaaatca---aatgccgcacaagacgacgaacaacaaaacgccgcacttagacgac 37876727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 28 - 94
Target Start/End: Original strand, 6358931 - 6358997
Alignment:
Q  28 caacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgac 94  Q
    |||||||| ||||||||||| || || ||| ||||||| |||||||||||||   ||||||||||||    
T  6358931 caacaagatgcgaaatcaaacaacgctgcacaagacgacgaacaacacaacgacacactcagacgac 6358997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 32 - 96
Target Start/End: Original strand, 7677935 - 7677996
Alignment:
Q  32 aagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||||||||||    |||||| ||||||| |||||||||||||| ||||| |||||||||    
T  7677935 aagacgcgaaatcaaac---gccgcacaagacgacgaacaacacaacgccgcacttagacgacga 7677996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 96
Target Start/End: Original strand, 34128725 - 34128810
Alignment:
Q  12 gaaccaaacaa-cactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||||| |||  |||||||||||  ||||||| || | |||| ||||||| |||||||| ||| | |||||||||||||||    
T  34128725 gaaccaaacaaacaccacaacaagacgcacaatcaaacaacgtcgcacaagacgacgaacaacataacaccgcactcagacgacga 34128810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 36943172 - 36943244
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||| || |||| |||||||||||||    |||||| ||||||| |||||||||||||| ||||| |||||||||    
T  36943172 aacaccgcgacaatacgcgaaatcaaac---gccgcacaagacgacgaacaacacaacgccgcacttagacgacga 36943244  T

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Target: scaffold0347 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 6083 - 5994
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||||||  ||||| ||||||| ||||||||||||| || |||||| ||||||| |||||||||| |  ||||||||||||||||    
T  6083 atatgaaccaaatgaacaccgcaacaatacgcgaaatcaaacaacgccgcacaagacgacgaacaacacatcattgcactcagacgacga 5994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 12947310 - 12947399
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||||||| |||||  |||||||| ||||||||||| || |||||| ||||||| ||||||||||| || ||||||| |||||||    
T  12947310 atatgaaccaaacgaacaccacaacaagatgcgaaatcaaacaacgccgcacaagacgacgaacaacacaaagccgcactcaaacgacga 12947399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 53807894 - 53807982
Alignment:
Q  8 atatgaaccaaacaacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||||||||||  ||||| ||||||||| || |||||||| ||||||||| ||||||| ||||||||||| |  ||||| |||||||||    
T  53807894 atatgaaccaacgaacacagcaacaagatgccaaatcaaacaatgccgcagaagacgacgaacaacacaaggtcgcacttagacgacga 53807982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 12 - 93
Target Start/End: Complemental strand, 29239391 - 29239309
Alignment:
Q  12 gaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacga 93  Q
    ||||||||| |||||  |||||||||| ||||||||| |  |||||| ||||||| |||||||||||||| ||||||||||||    
T  29239391 gaaccaaacgaacaccacaacaagacgtgaaatcaaacagcgccgcacaagacgacgaacaacacaacgccgcactcagacga 29239309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 40487364 - 40487291
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||| || ||||||||||||||||||  | |||||| ||||||| |||||||||||||| ||||| |||||||||    
T  40487364 aacaccgcgacaagacgcgaaatcaaa--acgccgcacaagacgacgaacaacacaacgccgcacttagacgacga 40487291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 94
Target Start/End: Complemental strand, 25842707 - 25842641
Alignment:
Q  28 caacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgac 94  Q
    |||||||||| ||||||||| ||| ||||| |||| ||||||||||||||||  ||||||| |||||    
T  25842707 caacaagacgagaaatcaaacaataccgcagaagatgatgaacaacacaacgtcgcactcaaacgac 25842641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 35175456 - 35175367
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||| |||||||| ||||| ||||||||||  ||||||||| || || ||| ||||||||||||||||||| |  | |||||||||||||    
T  35175456 atataaaccaaacgaacaccgcaacaagacatgaaatcaaacaacgctgcacaagacgatgaacaacacaatgtcgtactcagacgacga 35175367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 36461481 - 36461553
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||| || ||||||||||||||||||    |||||| ||||||| |||||||||||||| ||||| |||||||||    
T  36461481 aacaccgcgacaagacgcgaaatcaaac---gccgcacaagacgacgaacaacacaacgccgcacttagacgacga 36461553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 41818243 - 41818194
Alignment:
Q  28 caacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaa 77  Q
    |||||||||||||||||||| ||| ||||| ||||||| |||||||||||    
T  41818243 caacaagacgcgaaatcaaacaataccgcacaagacgacgaacaacacaa 41818194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 43488640 - 43488712
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||| |||||||||||||||||||||    |||||| ||||||| ||||||||||||||  |||| |||||||||    
T  43488640 aacaccgcaacaagacgcgaaatcaaac---gccgcacaagacgacgaacaacacaacgccacacttagacgacga 43488712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 20465119 - 20465167
Alignment:
Q  116 cttgatatatgtgaaaatcacttatttgtattaaacaaaaggggaaaaa 164  Q
    |||||||||||| |||||||||||||| |||| || |||||||||||||    
T  20465119 cttgatatatgttaaaatcacttatttatattgaaaaaaaggggaaaaa 20465167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 51303789 - 51303837
Alignment:
Q  116 cttgatatatgtgaaaatcacttatttgtattaaacaaaaggggaaaaa 164  Q
    |||||| ||||||||||||||||||||| ||| || |||||||||||||    
T  51303789 cttgatgtatgtgaaaatcacttatttggattgaaaaaaaggggaaaaa 51303837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 96
Target Start/End: Complemental strand, 7546632 - 7546573
Alignment:
Q  37 gcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||||| || |||||| ||||||| |||||||||||||  ||||| |||||||||    
T  7546632 gcgaaatcaaacaacgccgcacaagacgacgaacaacacaacgtcgcactaagacgacga 7546573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 29921992 - 29921910
Alignment:
Q  116 cttgatatatgtgaaaatcacttatttgtattaaacaaaaggggaaaaatagatggtgaggcgtgatttgagatcaaaaaatga 199  Q
    ||||||||||||| |||||||||||||  ||| ||  |||||||||||| |||||| |||  ||||||| || |||||||||||    
T  29921992 cttgatatatgtggaaatcacttatttagattgaaagaaaggggaaaaa-agatggagagaagtgattttagctcaaaaaatga 29921910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 29971145 - 29971063
Alignment:
Q  116 cttgatatatgtgaaaatcacttatttgtattaaacaaaaggggaaaaatagatggtgaggcgtgatttgagatcaaaaaatga 199  Q
    ||||||||||||| |||||||||||||  ||| ||  |||||||||||| |||||| |||  ||||||| || |||||||||||    
T  29971145 cttgatatatgtggaaatcacttatttagattgaaagaaaggggaaaaa-agatggagagaagtgattttagctcaaaaaatga 29971063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 30 - 96
Target Start/End: Original strand, 25461060 - 25461126
Alignment:
Q  30 acaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||| | |||||||| || | |||||||||||| |||||||| ||||| ||||||| |||||||    
T  25461060 acaagacacaaaatcaaacaacgtcgcataagacgacgaacaacataacgccgcactcaaacgacga 25461126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 9998505 - 9998433
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||| || |||| |||||||||||||    |||||| ||||||| |||||||||||||| ||||| |||||||||    
T  9998505 aacaccgcgacaaaacgcgaaatcaaac---gccgcacaagacgacgaacaacacaacgccgcacttagacgacga 9998433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 10108274 - 10108202
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||| || |||| |||||||||||||    |||||| ||||||| |||||||||||||| ||||| |||||||||    
T  10108274 aacaccgcgacaaaacgcgaaatcaaac---gccgcacaagacgacgaacaacacaacgccgcacttagacgacga 10108202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 10233108 - 10233036
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||| || |||| |||||||||||||    |||||| ||||||| |||||||||||||| ||||| |||||||||    
T  10233108 aacaccgcgacaaaacgcgaaatcaaac---gccgcacaagacgacgaacaacacaacgccgcacttagacgacga 10233036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 42460766 - 42460725
Alignment:
Q  39 gaaatcaaataatgccgcataagacgatgaacaacacaacgc 80  Q
    ||||||||| || |||||| ||||||||||||||||||||||    
T  42460766 gaaatcaaacaacgccgcacaagacgatgaacaacacaacgc 42460725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 47132959 - 47132870
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||| ||||| ||||| ||||||||||||||||| ||| || |||||| || |||| ||||||||||||||  ||||||||||||||    
T  47132959 atatgaagcaaacgaacaccgcaacaagacgcgaaattaaacaacgccgcacaaaacgacgaacaacacaacgccccactcagacgacga 47132870  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 24583006 - 24582937
Alignment:
Q  8 atatgaaccaaacaacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaa 77  Q
    |||||||||||  ||||| ||||||||| || |||||||| || |||||| ||| |||||||||||||||    
T  24583006 atatgaaccaacgaacaccgcaacaagatgccaaatcaaacaacgccgcacaaggcgatgaacaacacaa 24582937  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 123 - 251
Target Start/End: Original strand, 34413247 - 34413376
Alignment:
Q  123 tatgtgaaaatcacttatttgtattaaacaaaaggggaaaaatagatggtgaggcgtgatttgagatcaaaaaatgatatacaaccacctcttctcgata 222  Q
    ||||||||||||||||||||  ||| ||  |||||||||||| |||||  |||| ||||||  |||| ||||| |||  || || |||| || |||||||    
T  34413247 tatgtgaaaatcacttatttagattgaaagaaaggggaaaaaaagatgcagaggggtgattctagataaaaaattgacctaaaatcacccctactcgata 34413346  T
Q  223 agtgaagga-aaaaagaacttggagagaag 251  Q
    |||||| || ||||| ||||| ||||||||    
T  34413347 agtgaaagagaaaaaaaacttagagagaag 34413376  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 8 - 92
Target Start/End: Complemental strand, 41994483 - 41994398
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacg 92  Q
    |||||||| |||| |||||  ||||||||  |||||||||| || || ||| |||||||||||||||||||||| ||| |||||||    
T  41994483 atatgaacgaaacgaacaccacaacaagatccgaaatcaaacaacgctgcacaagacgatgaacaacacaacgccgcattcagacg 41994398  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 19060965 - 19060877
Alignment:
Q  8 atatgaaccaaacaacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||||||||||  ||||||||||||||| |  |||||||| || ||| || ||||||| ||||||||||| |  ||||| |||||||||    
T  19060965 atatgaaccaacgaacactgcaacaagatgtcaaatcaaacaacgccacacaagacgacgaacaacacaaggtcgcacttagacgacga 19060877  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 44543328 - 44543240
Alignment:
Q  8 atatgaaccaaacaacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||||||||||  ||||| |||| |||| || |||||||| || ||||||||| |||| ||||||||||| |  ||||| |||||||||    
T  44543328 atatgaaccaacgaacaccgcaataagatgccaaatcaaacaacgccgcataatacgacgaacaacacaaagtcgcacttagacgacga 44543240  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 223
Target Start/End: Complemental strand, 45415502 - 45415395
Alignment:
Q  116 cttgatatatgtgaaaatcacttatttgtatt-aaacaaaaggggaaaaatagatggtgaggcgtgatttgagatcaaaaaatgatatacaaccacctct 214  Q
    ||||||| ||||||||| |||||||||  ||| ||| ||||||||||||| |||||  |||| ||||||  ||||||||||||||  || ||||||| ||    
T  45415502 cttgatagatgtgaaaaccacttatttaaattgaaagaaaaggggaaaaa-agatgtagaggggtgattctagatcaaaaaatgacctaaaaccacccct 45415404  T
Q  215 tctcgataa 223  Q
     ||||||||    
T  45415403 cctcgataa 45415395  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 93
Target Start/End: Original strand, 32679158 - 32679217
Alignment:
Q  34 gacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacga 93  Q
    ||||||||||||||  | |||||| |||| || |||||||||||||| ||||||||||||    
T  32679158 gacgcgaaatcaaactacgccgcacaagatgacgaacaacacaacgccgcactcagacga 32679217  T

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Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 8 - 94
Target Start/End: Complemental strand, 43412430 - 43412343
Alignment:
Q  8 atatgaaccaaacaa-cactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgac 94  Q
    ||||||| ||||||| ||||||||  |||| |||| |||||||| | |||| |||||||||||||||||| | |  ||||||||||||    
T  43412430 atatgaatcaaacaaacactgcaattagacacgaactcaaataacgtcgcaaaagacgatgaacaacacagcacatcactcagacgac 43412343  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 10776539 - 10776581
Alignment:
Q  52 gccgcataagacgatgaacaacacaacgctgcactcagacgac 94  Q
    |||||||||||||| |||||||||||||| ||||| |||||||    
T  10776539 gccgcataagacgacgaacaacacaacgccgcacttagacgac 10776581  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 9341783 - 9341694
Alignment:
Q  8 atatgaaccaaacaa-cactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||| ||||||| ||| |||||||||| |  ||||||| || || ||| ||||||| |||||||| ||| || ||||||||||||||    
T  9341783 atatgaatcaaacaaacaccgcaacaagacacagaatcaaacaacgctgcacaagacgacgaacaacataacactccactcagacgacga 9341694  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 16161858 - 16161801
Alignment:
Q  39 gaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||| || |||||| ||||||| |||||||||||||  ||||| |||||||||    
T  16161858 gaaatcaaacaacgccgcacaagacgacgaacaacacaacgtcgcactaagacgacga 16161801  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 35484441 - 35484513
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||| || ||||||||||||| ||||| |   |||| ||||||| |||||||||||||| ||||| |||||||||    
T  35484441 aacaccgcgacaagacgcgaaagcaaatga---cgcacaagacgacgaacaacacaacgccgcacttagacgacga 35484513  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 49626969 - 49626900
Alignment:
Q  8 atatgaaccaaacaacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaa 77  Q
    |||||||||||  ||||| ||||||||| |  |||||||| || |||||| ||||||| |||||||||||    
T  49626969 atatgaaccaacgaacaccgcaacaagatgtcaaatcaaacaacgccgcacaagacgacgaacaacacaa 49626900  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 88
Target Start/End: Complemental strand, 31296860 - 31296793
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactca 88  Q
    ||||||||||||||| || |||||||| || |||||| |||| ||||||||||||||||| |||||||    
T  31296860 aacactgcaacaagatgcaaaatcaaacaacgccgcacaagatgatgaacaacacaacgccgcactca 31296793  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 73
Target Start/End: Original strand, 30140575 - 30140627
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaac 73  Q
    ||||||||||||||||| ||||||||  ||||||||| |||||||||||||||    
T  30140575 aacactgcaacaagacgtgaaatcaagcaatgccgcacaagacgatgaacaac 30140627  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 93
Target Start/End: Original strand, 26588508 - 26588594
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacga 93  Q
    ||||||||||||| ||||| ||||||||||| ||||||||| || |||||| |||||||  | ||||||||| | ||||||| ||||    
T  26588508 atatgaaccaaacgaacaccgcaacaagacgggaaatcaaacaacgccgcacaagacgacaatcaacacaactccgcactcaaacga 26588594  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 13546713 - 13546785
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||||| ||||||| ||| ||||||||    |||||||||||||| |||||||||||||| ||||||| |||||||    
T  13546713 aacactacaacaaggcgcaaaatcaaac---gccgcataagacgacgaacaacacaacgccgcactcaaacgacga 13546785  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 96
Target Start/End: Complemental strand, 8102751 - 8102687
Alignment:
Q  32 aagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||| ||||||||||| || |||||| ||||||| ||| ||||||||| |||||| |||||||||    
T  8102751 aagatgcgaaatcaaacaacgccgcacaagacgacgaaaaacacaacgttgcactaagacgacga 8102687  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 80
Target Start/End: Original strand, 1933726 - 1933801
Alignment:
Q  6 tgatatgaaccaaacaa-cactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgc 80  Q
    ||||||||||||||||| ||| ||||| |||| | |||||||| ||||||||| |||||||  | |||||||||||    
T  1933726 tgatatgaaccaaacaaacaccgcaaccagacacaaaatcaaacaatgccgcacaagacgactagcaacacaacgc 1933801  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 94
Target Start/End: Original strand, 29319928 - 29319998
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgac 94  Q
    ||||| || ||||||||||||||||||    ||||||||||| || |||||||||||||| ||||| |||||||    
T  29319928 aacaccgcgacaagacgcgaaatcaaac---gccgcataagaggacgaacaacacaacgccgcacttagacgac 29319998  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 28981231 - 28981145
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacga 93  Q
    ||||||||||||| |||||  ||||||||  | |||||||| ||  ||||| ||||||| |||||||||||||| | ||||||||||    
T  28981231 atatgaaccaaacgaacaccacaacaagatacaaaatcaaacaacaccgcagaagacgacgaacaacacaacgccgtactcagacga 28981145  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 8 - 93
Target Start/End: Complemental strand, 30493586 - 30493500
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacga 93  Q
    ||||||||||||| |||||   |||||||  |||||||||| || || ||| ||||||| |||||||||||| | ||||||||||||    
T  30493586 atatgaaccaaacgaacaccagaacaagatacgaaatcaaacaacgctgcacaagacgacgaacaacacaacaccgcactcagacga 30493500  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 96
Target Start/End: Complemental strand, 127675 - 127638
Alignment:
Q  59 aagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||| |||||||||||||||||||| |||||||||    
T  127675 aagacgacgaacaacacaacgctgcacttagacgacga 127638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 1523426 - 1523369
Alignment:
Q  39 gaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||| |||| |||| ||||||| |||||||||||||  ||||| |||||||||    
T  1523426 gaaatcaaacaatgtcgcacaagacgacgaacaacacaacgtcgcactaagacgacga 1523369  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 7976213 - 7976302
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    |||||||| |||| |||||  |||||||||||  ||| ||| || |||||| ||||||| ||||||||||||   |||||||||||||||    
T  7976213 atatgaactaaacgaacaccacaacaagacgcataattaaaaaacgccgcacaagacgacgaacaacacaacaacgcactcagacgacga 7976302  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 96
Target Start/End: Original strand, 33053218 - 33053290
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||| || |||| |||||||||||||    |||||| ||||||| |||||||||||||| ||||| |||||||||    
T  33053218 aacaccgcgacaaaacgcgaaatcaaac---gccgcacaagacgacgaacaacacaacgccgcacttagacgacga 33053290  T

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Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 96
Target Start/End: Complemental strand, 93160 - 93070
Alignment:
Q  8 atatgaaccaaac-aacactgcaacaagacgcgaa-atcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacgacga 96  Q
    ||||||||||||| |||||  ||||||||| |||| |||||| || |||||| ||||| |  ||||||||||||| |||||||||||||||    
T  93160 atatgaaccaaacgaacaccacaacaagacacgaatatcaaacaacgccgcacaagacaacaaacaacacaacgcagcactcagacgacga 93070  T

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Target: scaffold0445 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 21 - 93
Target Start/End: Complemental strand, 1383 - 1314
Alignment:
Q  21 aacactgcaacaagacgcgaaatcaaataatgccgcataagacgatgaacaacacaacgctgcactcagacga 93  Q
    ||||| |||||||||||||||||||||    ||| || ||||||| |||||||||||||| ||||| ||||||    
T  1383 aacaccgcaacaagacgcgaaatcaaac---gccacacaagacgacgaacaacacaacgccgcacttagacga 1314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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