View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19487_high_6 (Length: 458)
Name: NF19487_high_6
Description: NF19487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19487_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 134 - 442
Target Start/End: Complemental strand, 38865995 - 38865686
Alignment:
| Q |
134 |
cacaagcacaagcactttttccgcacaaaagtacgtatagctgtagacaaatagtattacttagattacattacattagattgcagatcaaatttaatta |
233 |
Q |
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| T |
38865995 |
cacaagcacaagcactttttccgcacaaaagtacgtatagctgtagacaaatagtattacttagattacattacattagattgcagatcaaatttaatta |
38865896 |
T |
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| Q |
234 |
gcttaaacattttgtcaatttgatcgatcaattgttgtcatttacattatcccgcccgctttaattaggaaccacgtcttcttaaaccaaacatatatat |
333 |
Q |
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| T |
38865895 |
gcttaaacattttgtcaatttgatcgatcaattgttgtcatttacattatcccgcccgctttaattaggaaccacgtcttcttaaacaaaacatatatat |
38865796 |
T |
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| Q |
334 |
tgcgatataaccacttgcatgaagattgtacttaaacaaatatttcatatggcaaaaagta-tatttacggatccaattatattctaataagatttagct |
432 |
Q |
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| T |
38865795 |
tgcgatataaccacttgcatgaagattgtacttaaacaaatatttcatatggcaaaaagtattatttacggatccaattatattctaataagatttatct |
38865696 |
T |
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| Q |
433 |
agctaggtga |
442 |
Q |
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| T |
38865695 |
agctaggtga |
38865686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 10 - 84
Target Start/End: Complemental strand, 38866114 - 38866040
Alignment:
| Q |
10 |
ataattcttgtcttccgtggttactatactaattcacgatgtgccctactacttcatccaaattgccaagaagct |
84 |
Q |
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| T |
38866114 |
ataattcttgtcttccgtggttactatactaattcactatgtgccctactacttcatccaaattgccaagaagct |
38866040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 415
Target Start/End: Complemental strand, 38862444 - 38862323
Alignment:
| Q |
291 |
gctttaattaggaaccacgtcttcttaaaccaaacatatatattgcgatataaccacttgcatgaagattgtacttaaacaaatatttcatatggcaaaa |
390 |
Q |
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| T |
38862444 |
gctttaattaggagccacgacttcttaaaccaa----atatattacgatctaaccacttgcatgaacatcataacaaaacaaatatttcatatagcaaaa |
38862349 |
T |
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| Q |
391 |
agtatat-ttacggatccaattatat |
415 |
Q |
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| || | |||||||||||||||||| |
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| T |
38862348 |
gggatttgttacggatccaattatat |
38862323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 198 - 278
Target Start/End: Complemental strand, 38841906 - 38841834
Alignment:
| Q |
198 |
attacattacattagattgcagatcaaatttaattagcttaaacattttgtcaatttgatcgatcaattgttgtcatttac |
278 |
Q |
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| T |
38841906 |
attaaattatattagattgcagatcaaattta----gcttaaacattttgtcaattt----gatcaattgttgtcatttac |
38841834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 257
Target Start/End: Original strand, 38850285 - 38850329
Alignment:
| Q |
212 |
gattgcagatcaaatttaattagcttaaacattttgtcaatttgat |
257 |
Q |
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| T |
38850285 |
gattgcatatcaaatt-aattagcttaaacattttgccaatttgat |
38850329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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