View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19487_low_1 (Length: 929)
Name: NF19487_low_1
Description: NF19487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19487_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 555; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 13 - 706
Target Start/End: Original strand, 32764184 - 32764874
Alignment:
| Q |
13 |
acaatctcttgaaatacatctgaaatcacataggagctatccttgtactgaccatctcttacaaactggaaaccgccaaaaccataaccgcgacaaaaca |
112 |
Q |
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| T |
32764184 |
acaatctcttgaaatacatctgaaatcacataggagctatccttgtactgatcatctcttacaaactggaaaccgccaaaaccataaccgcaacaaaacc |
32764283 |
T |
|
| Q |
113 |
aactgattaaattagtggagtctactcccaagtaattttagcgaataaacggtgcacagacagag--acaaaatccgggagtgtataagcaattagttaa |
210 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
32764284 |
aactgattaaattagtggagtctactcccaagtaattttagcgaataaacggtgcacagacagagagacaaaatccgggagtgtataaacaattagttaa |
32764383 |
T |
|
| Q |
211 |
gttgagaaatgcagagaatgaaactaaatattgtgtatgatacctgaatatatagttaaggacaaatatttccaaagtcatgcgccctaattctgtgaga |
310 |
Q |
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| T |
32764384 |
gttgagaaatgcagagaatgaaactaaatattgtgtatgatacctgaatatatagttaaggacaaatatttccaaagtcatgcgccctaattctgtgaga |
32764483 |
T |
|
| Q |
311 |
cacctttcatcatgctcaatacaatctttgtcgaaatcctccccagagtgtccattctgcaagaacacgggaaacaggtccttagcaatcaaaaggattt |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
32764484 |
cacctttcatcatgctcaatacaatctttgtcgaaatcctccccagagtgtccattctgcaagaacatgggaaacaggtccttagcaatcaaaaggattt |
32764583 |
T |
|
| Q |
411 |
cagagcccttttggcaattccttgttactgaagataccattttcagatacctaatatatgcttcaaataccagcaggataggtttgtttctttctaaatt |
510 |
Q |
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| T |
32764584 |
cagagcccttttggcacttccttgttaccgaagatacca-tttcagatacctaatatatgcttcaaatacgagcaggataggtttgtttctttctaaatt |
32764682 |
T |
|
| Q |
511 |
atatatgtaaaaatgtacgctatcattaatttacatctacgagatatggtaaagnnnnnnnnggcaacacggcct-aaatgaattcatggttgaaaggga |
609 |
Q |
| |
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||| |||||||||||||| |||||||||||| |||||||||||||||||||||| || |||||||||| ||||||||||| | | |||||||| |
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| T |
32764683 |
atacatgtaaaaatgtacactatcattaattaacatctacgagatatggtaaag-aaaaaaaggaaacacggcctaaaatgaattca-gttggaaaggga |
32764780 |
T |
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| Q |
610 |
atatttcagttagtggtgagcaaatactaaaaaattcaatatcaagctatcaagcatatgcagctttagaataactaactaatccatatttgaaccc |
706 |
Q |
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| T |
32764781 |
atatttcagttagtggtgagcaaatactaaaaaattcaatatcaagctatcaagcatgtgcaactttagaata---aactaatccatatttgaaccc |
32764874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 3 - 409
Target Start/End: Original strand, 32752713 - 32753108
Alignment:
| Q |
3 |
aatggccaaaacaatctcttgaaata-catctgaaatcacataggagctatccttgtactgaccatctcttacaaactggaaaccgccaaaaccataacc |
101 |
Q |
| |
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||||||||| ||||||||||||||| |||||||| ||||| ||||||||||| ||||||||||||||||||||||| ||||||| |||||||| |
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| T |
32752713 |
aatggccaaggcaatctcttgaaataacatctgaactcacaaaggagctatccacgtactgaccatctcttacaaactagaaaccgacaaaacca----- |
32752807 |
T |
|
| Q |
102 |
gcgacaaaacaaactgattaaattagtggagtctactcccaagtaattttagcgaataaacggtgcacagacagagacaaaatccgggagtgtataagca |
201 |
Q |
| |
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||||||||||||||| ||||||||| || || ||||| || ||||||| | | |||||||| |||||| | ||||||||||| || |
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| T |
32752808 |
------------actgattaaattagtagagtctactaccgggtgatttttgcaaataaacagctcccagacaga--caaaattcaggagtgtataaaca |
32752893 |
T |
|
| Q |
202 |
attagttaagttgagaaatgcagagaatgaaactaaata---------ttgtgtatgatacctgaatatatagttaaggacaaatatttccaaagtcatg |
292 |
Q |
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| | |||| |||||||| || |||| || ||||| || ||||||||| ||||||||||||| |||||||||||||||||||||| | |
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| T |
32752894 |
agcaattaaattgagaaa--cacagaacgagactaattacaaaaaaaattgtgtatgctacctgaatatatgagcaaggacaaatatttccaaagtccta |
32752991 |
T |
|
| Q |
293 |
cgccctaattctgtgagacacctttcatcatgctcaatacaatctttgtcgaaatcctccccagagtgtccattctgcaagaacacgggaaac-aggtcc |
391 |
Q |
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||||||||||||||||||| ||||||||| || ||||| ||||||| | ||||||||| ||||||| | ||| || ||| ||||| ||||| ||| | |
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| T |
32752992 |
cgccctaattctgtgagacgcctttcatcgcgcacaatagaatctttattgaaatcctcaccagagtttacatcctacaa-aacacaagaaacggggtac |
32753090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 576 - 739
Target Start/End: Original strand, 32753330 - 32753494
Alignment:
| Q |
576 |
aacacggcctaaat-gaattcatggttgaaagggaatatttcagttagtggtgagcaaatactaaaaaattcaatatcaagctatcaagcatatgcagct |
674 |
Q |
| |
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|||||||||||||| ||||| ||| | |||||||||||||| |||||||| || |||||| |||||||| || |||||||||||||| ||| ||| || |
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| T |
32753330 |
aacacggcctaaattgaattaatgttggaaagggaatatttaagttagtgttgtacaaatagtaaaaaatgcactatcaagctatcaaacatgggcaact |
32753429 |
T |
|
| Q |
675 |
ttagaataactaactaatccatatttgaaccc-gtaattgtttacaagggtgaaagattagttcct |
739 |
Q |
| |
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||| ||||||||| ||||||||||||| |||| || | ||||||| || ||||| |||||||||| |
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| T |
32753430 |
ttaaaataactaa-taatccatatttgcacccaatattagtttacagggatgaaaaattagttcct |
32753494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 804 - 893
Target Start/End: Original strand, 32754017 - 32754106
Alignment:
| Q |
804 |
aaaacaactcaatctaaacatactcagttcagaatacagtagccaagttttcggtatcacttttttacagatttcttttgacaaataggc |
893 |
Q |
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|||| |||||||||||||||||| |||||||||||||||| ||||||||| ||||| | |||| ||||||||| || ||||||||||| |
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| T |
32754017 |
aaaaaaactcaatctaaacatacgaagttcagaatacagtatccaagtttttggtattatattttcacagatttcgttcgacaaataggc |
32754106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 268 - 370
Target Start/End: Complemental strand, 16777096 - 16776994
Alignment:
| Q |
268 |
aaggacaaatatttccaaagtcatgcgccctaattctgtgagacacctttcatcatgctcaatacaatctttgtcgaaatcctccccagagtgtccattc |
367 |
Q |
| |
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||||||||||||||||| |||| | || || ||||||||||||| |||||||||| |||| ||| | ||||| | ||| || |||||||||| ||||| | |
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| T |
16777096 |
aaggacaaatatttccagagtcctacgacccaattctgtgagacgcctttcatcacgctctatagattctttattgaagtcatccccagagtttccatcc |
16776997 |
T |
|
| Q |
368 |
tgc |
370 |
Q |
| |
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||| |
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|
| T |
16776996 |
tgc |
16776994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 454 - 541
Target Start/End: Original strand, 32753196 - 32753278
Alignment:
| Q |
454 |
cagatacctaatatatgcttcaaataccagcaggataggtttgtttctttctaaattatatatgtaaaaatgtacgctatcattaatt |
541 |
Q |
| |
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|||||||||||||||||| |||| ||| ||| ||| |||||| ||||| ||||||||||||||||||| ||| |||||||||||| |
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| T |
32753196 |
cagatacctaatatatgc---aaat--cagtaggctagatttgttgctttcaaaattatatatgtaaaaatctacactatcattaatt |
32753278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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