View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19487_low_11 (Length: 393)
Name: NF19487_low_11
Description: NF19487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19487_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 45279345 - 45279730
Alignment:
| Q |
1 |
caactatactatcatcatagcttcacacctctaaagtcaca--cacaaattgaattaatgaataataaagctatgacctatattcattagaatcaataat |
98 |
Q |
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| T |
45279345 |
caactatactatcatcatagcttcacacctctaaagtcacacacacaaattgaattaatgaataataaagctatgacctatattcattagaatcaataat |
45279444 |
T |
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| Q |
99 |
cttccaccttaacagcttcacgaggcatttcataggcatctttaggccttgattttttaacaccagtggtagtaaaccatactttgtcagacttataact |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45279445 |
cttccaccttaacagcttcacgaggcatttcataggcatctttaggccttgattttttaacaccagtggtagtaaaccatactttgtcagacttataact |
45279544 |
T |
|
| Q |
199 |
ctcaacataaacactagtgaccttaacccacacaagaaccttggtcttcattccatctataacaatgagttttccctttgacaatgttcctttgacgcga |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45279545 |
ctcaacataaacactagtgaccttaacccacacaagaaccttggtcttcattccatctataacaatgagttttccctttgacaatgttcctttgacgcga |
45279644 |
T |
|
| Q |
299 |
tttgaatatctcacaatagacgagtccttgaagcatacctcagaagggcaggacaaatgcaccatcaactttccttttgattcatc |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
45279645 |
tttgaatatctcacaatagacgagtccttgaagcatacctcagaaggggaggacaaatgcaccatcaactttccttttgattcatc |
45279730 |
T |
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