View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19487_low_12 (Length: 362)
Name: NF19487_low_12
Description: NF19487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19487_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 272; Significance: 1e-152; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 81 - 352
Target Start/End: Original strand, 44475283 - 44475554
Alignment:
| Q |
81 |
aggggatatatgaatggagttctaattgtggagaaaattcgacagtattcaaaagtaacacataaaaataagaacaaaaaacaggatgcattcagtgcaa |
180 |
Q |
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| T |
44475283 |
aggggatatatgaatggagttctaattgtggagaaaattcgacagtattcaaaagtaacacataaaaataagaacaaaaaacaggatgcattcagtgcaa |
44475382 |
T |
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| Q |
181 |
agagagtaaagcagagatcgtgtatatgggcttttttgaagaccatcaaagctattatctgaatcttaatctgcaacttaacttggcatcaggtaaatta |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44475383 |
agagagtaaagcagagatcgtgtatatgggcttttttgaagaccatcaaagctattatctgaatcttaatctgcaacttaacttggcatcaggtaaatta |
44475482 |
T |
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| Q |
281 |
tttaatctttataaaaagtattatagaaaatttgattttgtattcatggttaccactatattatcacctttg |
352 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44475483 |
tttaatctttataaaaagtattatagaaaatttgattttgtattcatggttaccactatattatcacctttg |
44475554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 44474864 - 44474920
Alignment:
| Q |
19 |
atcctaatggaggttgtatatatcataattgctcatctggtgtgatccctttgatca |
75 |
Q |
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| T |
44474864 |
atcctaatggaggttgtatatatcataattgctcatctggtgtgatccctttgatca |
44474920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 75 - 303
Target Start/End: Original strand, 38633360 - 38633586
Alignment:
| Q |
75 |
atcgaaaggggatatatgaatggagttctaattgtggagaaaattcgacagtattcaaaagtaacacataaaaataaga---acaaaaaacaggatgcat |
171 |
Q |
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| T |
38633360 |
atcgaaagggaatgtatgcaaggagttctaattgtggagaaaattagacagtattcagaagtaacacataataataagaagaacaaaaaacaggatgcat |
38633459 |
T |
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| Q |
172 |
tcagtgcaaagagagtaaagcagagatcgtgtatatgggcttttttgaagaccatcaaagctattatctgaatcttaatctgcaacttaacttggcatca |
271 |
Q |
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| T |
38633460 |
ttagtgcaaagaaactaaagaagagatcgtgtatatgggcctttttgaagaccatcaaagctagtatctgaatcttaatctgc-----aacttggcaaca |
38633554 |
T |
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| Q |
272 |
ggtaaattatttaatctttataaaaagtatta |
303 |
Q |
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| T |
38633555 |
ggtaaattacttgatctttaaaaaaagtatta |
38633586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 142 - 351
Target Start/End: Original strand, 39849154 - 39849361
Alignment:
| Q |
142 |
ataaaaataagaacaaaaaacaggatgcattcagtgcaaagagagtaaagcagagatcgtgtatatgggcttttttgaagaccatcaaagctattatctg |
241 |
Q |
| |
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|||| ||||| ||||||||||||| |||||| ||||| |||| || |||| |||| ||||| |||||||| ||||||||||||||||||||||||| || |
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| T |
39849154 |
ataataataacaacaaaaaacagggtgcatttagtgcgaagaaagcaaagaagagttcgtgcatatgggcaattttgaagaccatcaaagctattatatg |
39849253 |
T |
|
| Q |
242 |
aatcttaatctgcaacttaacttggcatcaggtaaattatttaatctttataa-----aaagtattatagaaaatttgattttgtattcatggttaccac |
336 |
Q |
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||||||||||||| |||||||||||||||||||||||| |||||| || |||||||||| ||||||||||| | |||||| |||||||||| |
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| T |
39849254 |
aatcttaatctgc-----aacttggcatcaggtaaattatttgatcttttaaaaaattaaagtattatggaaaatttgatatagtattcgtggttaccac |
39849348 |
T |
|
| Q |
337 |
tatattatcaccttt |
351 |
Q |
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||||||||||||| |
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| T |
39849349 |
--tattatcaccttt |
39849361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 25 - 154
Target Start/End: Complemental strand, 38453470 - 38453341
Alignment:
| Q |
25 |
atggaggttgtatatatcataattgctcatctggtgtgatccctttgatcatcgaaaggggatatatgaatggagttctaattgtggagaaaattcgaca |
124 |
Q |
| |
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|||||| |||||||| || | ||| ||||||||||||||| | || | ||||||| || ||||||| | ||||||| ||||||||||||||| ||| |
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| T |
38453470 |
atggagattgtatatgtcctgattcctcatctggtgtgattctttctgttatcgaaatggaatatatgcaaagagttctgattgtggagaaaattagacc |
38453371 |
T |
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| Q |
125 |
gtattcaaaagtaacacataaaaataagaa |
154 |
Q |
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|||||| ||||||||||||| |||||||| |
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| T |
38453370 |
atattcagaagtaacacataataataagaa |
38453341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 145
Target Start/End: Original strand, 39849059 - 39849139
Alignment:
| Q |
65 |
ccctttgatcatcgaaaggggatatatgaatggagttctaattgtggagaaaattcgacagtattcaaaagtaacacataa |
145 |
Q |
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| T |
39849059 |
ccctttggttatcaaaagggaatatatgcaaggagttttaattgtggagaaaatcagaccgtattcagaagtaacacataa |
39849139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 260 - 351
Target Start/End: Complemental strand, 38453297 - 38453204
Alignment:
| Q |
260 |
aacttggcatcaggtaaattatttaatctttataa----aaagtattatagaaaatttgattttgtattcatggttaccactatattatcaccttt |
351 |
Q |
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|||||||||||||||||||||||| || ||| || ||| |||||| ||||||||||| | ||||||||||||||||| ||||||||||||| |
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| T |
38453297 |
aacttggcatcaggtaaattatttgattttttgaacaaaaaactattatggaaaatttgatatagtattcatggttaccac--tattatcaccttt |
38453204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 53 - 259
Target Start/End: Complemental strand, 7045640 - 7045435
Alignment:
| Q |
53 |
atctggtgtgatccctttgatcatcgaaaggggatatatgaatggagttctaattgtggagaaaattcgacagtattcaaaagtaacacataaaaataag |
152 |
Q |
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||||||||||||| ||||||| ||| |||| ||||||| | |||||||||||||||||||||||| | || ||||| |||||||| |||| |||| | |
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| T |
7045640 |
atctggtgtgatctctttgattatcaaaagaaaatatatgcaaggagttctaattgtggagaaaattaaataggattcagaagtaacatataataatagg |
7045541 |
T |
|
| Q |
153 |
aacaaaaaacaggatgcatt--cagtgcaaagagagtaaagcagagatcgtgtatatgggcttttttgaagaccatcaaagctattatctgaatcttaat |
250 |
Q |
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|||||||| || ||| ||| ||||| || | ||||||| | ||||||| ||||||| | |||| ||||||||||||||||||||||||||||||||| |
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| T |
7045540 |
aacaaaaagcaagataaatttacagtggaa--aaagtaaagaaaagatcgt-tatatggccattttagaagaccatcaaagctattatctgaatcttaat |
7045444 |
T |
|
| Q |
251 |
ctgcaactt |
259 |
Q |
| |
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|||||||| |
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|
| T |
7045443 |
ttgcaactt |
7045435 |
T |
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