View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19487_low_22 (Length: 203)
Name: NF19487_low_22
Description: NF19487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19487_low_22 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 7e-85; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 23 - 185
Target Start/End: Complemental strand, 23047595 - 23047433
Alignment:
| Q |
23 |
gtccatagtatcctttcatcaccaaaattgaatccgaattcaacaacgacgacttcggatcatgtccttccatcctctccactcaacaacaatggcttcg |
122 |
Q |
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| T |
23047595 |
gtccatagtatcctttcatcaccaaaattgaatccgagttcaacaacgacgacttcggatcatgtccttccatcctctccactcaacaacaatggcttcg |
23047496 |
T |
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| Q |
123 |
acttcagcttccgattcggcgtcaacatgttttcggtgtttccaggtcgcatacgtctgttct |
185 |
Q |
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| T |
23047495 |
acttcagcttccgattcggcgtcaacatgttttcggtgtttccaggtcgcatacgtctgttct |
23047433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 5e-61
Query Start/End: Original strand, 38 - 188
Target Start/End: Original strand, 44098122 - 44098272
Alignment:
| Q |
38 |
tcatcaccaaaattgaatccgaattcaacaacgacgacttcggatcatgtccttccatcctctccactcaacaacaatggcttcgacttcagcttccgat |
137 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
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| T |
44098122 |
tcatcaccaaaattgaatccgagttcaacaacgacgacttcgggtcctgtccttccatcctctccactcaacaacaatggcttcagcttcaacttccgat |
44098221 |
T |
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| Q |
138 |
tcggcgtcaacatgttttcggtgtttccaggtcgcatacgtctgttctctg |
188 |
Q |
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| T |
44098222 |
tcagcgtcaacatgtttccggtgtttccaggtcgcatacgtctgttctctg |
44098272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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