View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19487_low_3 (Length: 653)
Name: NF19487_low_3
Description: NF19487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19487_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 410; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 410; E-Value: 0
Query Start/End: Original strand, 21 - 609
Target Start/End: Original strand, 24851849 - 24852445
Alignment:
| Q |
21 |
caagggttggttccttttgaaaaaagtttgtctccagcaacacgtaagactagtattttaattatttgttaggtgaaatgcttccaggagacgtggagtt |
120 |
Q |
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| T |
24851849 |
caagggttggttccttttgaaaaaagtgtgtctttaggaacacgtaagactagtatttgaattatttgttaggtgaaatgcttccaggagacgtggagtt |
24851948 |
T |
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| Q |
121 |
gtgtactttgtggttcaaaattcgctcatctaatgctttcttattctggagttgcttccatttctaagtaatcatcaatggctttttgatagatattgca |
220 |
Q |
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| T |
24851949 |
gtgtactttg--gttcaaaattcgctcatctaatgctttcttattctggagttgcttccatttttaagtaatcattaatggccttttgatagatattgca |
24852046 |
T |
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| Q |
221 |
gccctatg--------tgtggaaccaaagccttgggtaaacaatttgatgtgcgtcttcttgcaatattagtgttcttgtgacattcttttactat---- |
308 |
Q |
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| T |
24852047 |
gccacgtgagatatcatgtggaaccaaagccttgggtaaacaatttgatgtgcgtcttcttgcaatattagtgttcttgtgacattcttttactagctat |
24852146 |
T |
|
| Q |
309 |
--tgctagcaacccaaccatagctctaaaagcataacgctgaaattatttatgaacacaaattgtcaccctgcttaccagagaggcaagtgtggttgtag |
406 |
Q |
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| T |
24852147 |
tatactagcaacccaaccatagctctaaaagcataacgctgaaattatttatgaacataaattataaccctgcttaccagagaggcaagtgtagttgtag |
24852246 |
T |
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| Q |
407 |
gttttatcatgtaatagggacacttgtctgcgttacaaatcataaataaacacgtcataaagagatgttcaatttaaaatgcttttacttataacttcct |
506 |
Q |
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|||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||| |
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| T |
24852247 |
gttttatcatgtaaaagggacacttgccagcgttacaaatcataaataaacacgtcataaagagatattcaatttaaaatgcttttagttataacttcct |
24852346 |
T |
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| Q |
507 |
acgacaacaatgtaaaacatcacccgttttctatcgatacatgtatcaatcaaaactgaaatgactatcttcttcataaaaaacgatcgaaatagctata |
606 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |||||||||||| ||||||| ||| ||||||| |||||||||||||||||||||| |
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| T |
24852347 |
acgacaacaatgt-aaacatcacccgttttctatcgatacacatatcaatcaaaattgaaatggcta---tcttcatcaaaaacgatcgaaatagctata |
24852442 |
T |
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