View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19487_low_5 (Length: 461)
Name: NF19487_low_5
Description: NF19487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19487_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 23 - 203
Target Start/End: Complemental strand, 31884495 - 31884315
Alignment:
| Q |
23 |
atcaaaggaacgaacacagccgaaaatcattcttgttcaatacacatcctaaaaaatttcttgttcaaccacactttccagacatttttccagtgtcaca |
122 |
Q |
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| T |
31884495 |
atcaaaggaacgaacacagctgaaaatcattcttgttcaatacacatccgaaaaaatttcttgttcaaccacactttccagacatttttccagtgtcaca |
31884396 |
T |
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| Q |
123 |
catgcggatacatggcatttcctaactactttagaaaattaaatcagattctcgcatgtgttttcttaccataagtccctc |
203 |
Q |
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| T |
31884395 |
catgcggatacatggcatttcctaactactttagaaaattaaatcagattctcgcatgtgttttcttaccataagtccctc |
31884315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 163; E-Value: 7e-87
Query Start/End: Original strand, 275 - 441
Target Start/End: Complemental strand, 31884243 - 31884077
Alignment:
| Q |
275 |
ggatttttcacataagcatttaagtgacgaagaagagaattatgatcaactcttgaagagtgttaagagtgatattaacaaaggtttaagtttaaagttt |
374 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
31884243 |
ggatttttcacataagcatttaagtgacgaagaagagaattatgatcaactcttgaagagtgttaagagcgatattaacaaaggtttaagtttaaagttt |
31884144 |
T |
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| Q |
375 |
agttaaaaactacatcacagcgtaaaattattagcataaaattttaggatttaaaacaggcatatca |
441 |
Q |
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| T |
31884143 |
agttaaaaactacatcacagcgtaaaattattagcataaaattttaggatttaaaacaggcatatca |
31884077 |
T |
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