View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19487_low_7 (Length: 444)
Name: NF19487_low_7
Description: NF19487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19487_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 43862147 - 43862551
Alignment:
| Q |
19 |
gcaggtagaaattaattaacaatattatgatccttgtacttgaaaaacattctttagatgtcatggaatttagcatggatcgatgaaaattaatttgaat |
118 |
Q |
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| T |
43862147 |
gcaggtagaaattaattaacaatattatgatccttgtacttaaaaaacattctttagatgtcatggaatt-agcatggatcgatgaaaattaatttgaat |
43862245 |
T |
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| Q |
119 |
aatgttgattgtacttttgcagtttgatgaaactagcttgctgttcaggcatgcatgcagagattgaccagcctttaatccacatgcagctgcttacaag |
218 |
Q |
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| T |
43862246 |
aatgttgattgtacttttgcagtttgatgaaactagctagctgttcaggcatgcatgcagagattgaccagcctttaatccacatgcagctgcttacaag |
43862345 |
T |
|
| Q |
219 |
attttaatttgtttggcatgttagattagttatctatgataacaaaattttatggaattataactttgtttaactttttcatggtcttcgagaaatttta |
318 |
Q |
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| T |
43862346 |
attttaatttgtttggcatgttagattagttatctatgataacaaaattttatggaattataactttgtttaactttttcatggtcttcgagaaatttta |
43862445 |
T |
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| Q |
319 |
gnnnnnnnnnnnaatatttttaaatataataaaaaatagctggacttgcgtgtgatgaaattctatgaaaattgtccgtctttgtatatatatgctttca |
418 |
Q |
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| T |
43862446 |
g-ttttttttttaatatttttaaatataataaaaaatagctggacttgcgtgtgatgaaattctatgaaaattgtccgtctttg----tatatgctttca |
43862540 |
T |
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| Q |
419 |
ttttgtctgtg |
429 |
Q |
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|||||| |||| |
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| T |
43862541 |
ttttgtgtgtg |
43862551 |
T |
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