View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19487_low_8 (Length: 423)
Name: NF19487_low_8
Description: NF19487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19487_low_8 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 395; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 13 - 423
Target Start/End: Complemental strand, 47281234 - 47280824
Alignment:
| Q |
13 |
aatatctatcttatttatttttgacttgggattgcagtaaccacaactagtgaagcaataactgcattgactatgttgcgagaaaacatagacatgtttg |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
47281234 |
aatatctatcttatttatttttgacttgggattgcagtaaccacaactagtgaagcaataactgcattgactatgttgcaagaaaacatagacatgtttg |
47281135 |
T |
|
| Q |
113 |
acctggtaatcgctgaagttcacatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagttggg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47281134 |
acctggtaatcgctgaagttcacatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagttggg |
47281035 |
T |
|
| Q |
213 |
aggatctgttttataattttcagctcttcatctttgttctgtttcttcattttcactctcatttatttatataattattaatcaatgattgttgttataa |
312 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47281034 |
gggatctgttttataattttcagctcttcatctttgttctgtttcttcattttcactctcatttatttatataattattaatcaatgattgttgttataa |
47280935 |
T |
|
| Q |
313 |
attgtttgatttcagtgttgtctgctcatggtgaaacggagctggtgatgaaggcaatttcccacggtgcctgtgattttctgctgaaacctgtgagatt |
412 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
47280934 |
attgtttgatttcagtgttgtctgcacatggtgaaacggagctggtgatgaaggcaatttcccacggtgcccgtgattttctgctgaaacctgtgagatt |
47280835 |
T |
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| Q |
413 |
ggaggagctaa |
423 |
Q |
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| T |
47280834 |
ggaggagctaa |
47280824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 40 - 423
Target Start/End: Complemental strand, 47275529 - 47275139
Alignment:
| Q |
40 |
gggattgcagtaaccacaactagtgaagcaataactgcattgactatgttgcgagaaaacatagacatgtttgacctggtaatcgctgaagttcacatgc |
139 |
Q |
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|||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||| || ||| ||| |
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| T |
47275529 |
gggattgcagtaacgacaactagtcaagcaaaaacggcattgactatgttgcgagaaaacaaagacaagtttgacctggtaatcgctgatgtgcacctgc |
47275430 |
T |
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| Q |
140 |
ctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcc---tgtcataagtaagttgggaggatctgttttataattttcagc |
236 |
Q |
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|||||||||||||||| |||||||| |||||||| | |||||| | ||| ||||| ||| |||||||| |||| ||||||||| | |||| ||||| |
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| T |
47275429 |
ctgacatggatggacttaagctgcttgaacttgtggaacttgagacggaccttccggtcgtcgtaagtaag-tggggggatctgttctgtaatcttcagt |
47275331 |
T |
|
| Q |
237 |
tcttcatctttgttctgtttcttcattttcactctcatttatttatataattattaatcaatgattgtt--gtta---taaattgtttgatttcagtgtt |
331 |
Q |
| |
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|||||||||||| | |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || | | |||||| ||||||||||| |
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| T |
47275330 |
tcttcatctttgctttgtttcttcattttcactctcatttattcatataattattaatcaatgattgtttggtgaacgtttgttgttttatttcagtgtt |
47275231 |
T |
|
| Q |
332 |
gtctgctcatggtgaaacggagctggtgatgaaggcaatttcccacggtgcctgtgattttctgctgaaacctgtgagattggaggagctaa |
423 |
Q |
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||||| | | || | ||||| |||||||||||| ||| ||| ||||||| |||||||||| |||||||||||||||| ||||||||| |
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| T |
47275230 |
gtctgaatctagcgataatgagctagtgatgaaggcagttttccatggtgcctctgattttctggtgaaacctgtgagattacaggagctaa |
47275139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 27 - 423
Target Start/End: Complemental strand, 49061346 - 49060940
Alignment:
| Q |
27 |
ttatttttgacttgggattgcagtaaccacaactagtgaagcaataactgcattgactatgttgcgagaaaacatagacatgtttgacctggtaatcgct |
126 |
Q |
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|||||| ||||| |||||||||||||||||||||||| |||||||||| || ||||| |||||| ||||||||| ||||| |||||||||||||||| | |
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| T |
49061346 |
ttatttctgactggggattgcagtaaccacaactagtcaagcaataacggcgttgaccatgttgagagaaaacaaagacaagtttgacctggtaatcagt |
49061247 |
T |
|
| Q |
127 |
gaagttcacatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagttgggaggatctgttttat |
226 |
Q |
| |
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|| || |||||||| |||||||||||| | |||||||| |||||||| |||||||||||||| ||||| ||||||||||||| | |||||||| | | |
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| T |
49061246 |
gatgtacacatgccggacatggatggatttaagctgcttgaacttgtgggacttgaaatggaccttcccgtcataagtaagt---ggggatctgtcatgt |
49061150 |
T |
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| Q |
227 |
aattttcagctcttcatct--------ttgttctgtttcttcattttcactctcatttatttatataattattaatcaatga-----ttgttgttataaa |
313 |
Q |
| |
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||| || ||| || || | || |||| ||| |||||||| ||| | |||||| ||| | || |||||||||| ||| | ||||||| |
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| T |
49061149 |
aatctttggctgttaatttttttcttctttttctatttattcattttgactattgtttattgatacgactactaatcaatgatacttttggttttataaa |
49061050 |
T |
|
| Q |
314 |
ttgtttgatttcagtgttgtctgctcatggtgaaacggagctggtgatgaaggcaatttcccacggtgcctgtgattttctgctgaaacctgtgagattg |
413 |
Q |
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||||||||||||||||||||||| ||||||| || ||||||||||||| | ||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
49061049 |
atgtttgatttcagtgttgtctgcatatggtgatacaaagctggtgatgaaaggaatttcccatggtgcctgtgattatctgctgaaacctgtgagatta |
49060950 |
T |
|
| Q |
414 |
gaggagctaa |
423 |
Q |
| |
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|||||||||| |
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| T |
49060949 |
gaggagctaa |
49060940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 34316047 - 34316118
Alignment:
| Q |
134 |
acatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagta |
205 |
Q |
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||||||||||||||||||| |||| || || |||| ||| |||||||| ||||||||||||||||| |||| |
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| T |
34316047 |
acatgcctgacatggatggtttcaaacttcttgaacatgttggacttgagatggatcttcctgtcattagta |
34316118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 86 - 209
Target Start/End: Complemental strand, 48870569 - 48870446
Alignment:
| Q |
86 |
tgttgcgagaaaacatagacatgtttgacctggtaatcgctgaagttcacatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaat |
185 |
Q |
| |
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||||| ||||||||| | ||| |||||||| |||||| | | ||||| ||||| |||||||||||| | ||||| || || ||||| |||||||| || |
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| T |
48870569 |
tgttgagagaaaacaaaaacaattttgacctagtaatcagtaatgttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagat |
48870470 |
T |
|
| Q |
186 |
ggatcttcctgtcataagtaagtt |
209 |
Q |
| |
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||| || ||||||||| ||||||| |
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| T |
48870469 |
ggacctacctgtcataggtaagtt |
48870446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 2888554 - 2888633
Alignment:
| Q |
130 |
gttcacatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagtt |
209 |
Q |
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| T |
2888554 |
gttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggatttacctgtcataagtaagtt |
2888633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 307 - 406
Target Start/End: Original strand, 2893287 - 2893386
Alignment:
| Q |
307 |
ttataaattgtttgatttcagtgttgtctgctcatggtgaaacggagctggtgatgaaggcaatttcccacggtgcctgtgattttctgctgaaacctgt |
406 |
Q |
| |
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||||||| ||||||||||||||||| ||||| ||| ||| || || |||||||||| | |||| |||||||| ||||||| ||||||||||||||| |
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| T |
2893287 |
ttataaagtgtttgatttcagtgttttctgcgaatgatgatccgaagatggtgatgaaaggaattgaacacggtgcttgtgattatctgctgaaacctgt |
2893386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 130 - 209
Target Start/End: Original strand, 2904657 - 2904736
Alignment:
| Q |
130 |
gttcacatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagtt |
209 |
Q |
| |
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||||| ||||| |||||||||||| | ||||| || || ||||| |||||||| ||||| || |||||||| |||||||| |
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| T |
2904657 |
gttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcatcagtaagtt |
2904736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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