View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19487_low_9 (Length: 422)
Name: NF19487_low_9
Description: NF19487
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19487_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 2499123 - 2498718
Alignment:
| Q |
1 |
atggttcatttccttcattgaaattcaaagtttatgttttcaatgaaagtttagttgagaatcttacttctccttcaataagacaagcccttgagaatcc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
2499123 |
atggttcatttccttcattgaaattcaaagtttatgttttcaatgaaagtttagttgagaatcttatttctccttcaataagacaagcacttgagaatcc |
2499024 |
T |
|
| Q |
101 |
attgaattatgcaagaagttatcttgccgatttacttgaagaatgtgttgagagagttatctatttagattctgatgttatagttgttgatgatattcaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2499023 |
attgaattatgcaagaagttatcttgccgatttacttgaagaatgtgttgagagagttatctatttagattctgatgttatagttgttgatgatattcaa |
2498924 |
T |
|
| Q |
201 |
gatttatggaaggtttcgttgaccgattcgaaggtaatcggtgcaccggaatattgtcatgcaaatttcacaagatattttagctatgagttttggtcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2498923 |
gatttatggaaggtttcgttgaccgattcgaaggtaatcggtgcaccggaatattgtcatgcaaatttcacaagatattttagctatgagttttggtcaa |
2498824 |
T |
|
| Q |
301 |
gttatgaattttctgaggtattcaaaggtagaaaaaataggccttgttatttcaacactggtgtgatggttatggatttgatgaaatggagagaaggtga |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2498823 |
gttatgaattttctgaggtattcaaaggtagaaaaaataggccttgttatttcaacactggtgtgatggtaatggatttgatgaaatggagagaaggtga |
2498724 |
T |
|
| Q |
401 |
atatac |
406 |
Q |
| |
|
|||||| |
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|
| T |
2498723 |
atatac |
2498718 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 27101711 - 27101306
Alignment:
| Q |
1 |
atggttcatttccttcattgaaattcaaagtttatgttttcaatgaaagtttagttgagaatcttacttctccttcaataagacaagcccttgagaatcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |
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| T |
27101711 |
atggttcatttccttcattgaaattcaaagtttatgttttcaatgaaagtttagttgagaatcttatttctccttcaataagacaagcacttgagaatcc |
27101612 |
T |
|
| Q |
101 |
attgaattatgcaagaagttatcttgccgatttacttgaagaatgtgttgagagagttatctatttagattctgatgttatagttgttgatgatattcaa |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27101611 |
attgaattatgcaagaagttatcttgccgatttacttgaagaatgtgttgagagagttatctatttagattctgatgttatagttgttgatgatattcaa |
27101512 |
T |
|
| Q |
201 |
gatttatggaaggtttcgttgaccgattcgaaggtaatcggtgcaccggaatattgtcatgcaaatttcacaagatattttagctatgagttttggtcaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27101511 |
gatttatggaaggtttcgttgaccgattcgaaggtaatcggtgcaccggaatattgtcatgcaaatttcacaagatattttagctatgagttttggtcaa |
27101412 |
T |
|
| Q |
301 |
gttatgaattttctgaggtattcaaaggtagaaaaaataggccttgttatttcaacactggtgtgatggttatggatttgatgaaatggagagaaggtga |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
27101411 |
gttatgaattttctgaggtattcaaaggtagaaaaaataggccttgttatttcaacactggtgtgatggtaatggatttgatgaaatggagagaaggtga |
27101312 |
T |
|
| Q |
401 |
atatac |
406 |
Q |
| |
|
|||||| |
|
|
| T |
27101311 |
atatac |
27101306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 343 - 398
Target Start/End: Complemental strand, 15964520 - 15964465
Alignment:
| Q |
343 |
cttgttatttcaacactggtgtgatggttatggatttgatgaaatggagagaaggt |
398 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
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| T |
15964520 |
cttgttatttcaacactggtgtaatggtaatggatttgatgaaatggagagaaggt |
15964465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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