View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19488_high_1 (Length: 675)
Name: NF19488_high_1
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_high_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 72 - 658
Target Start/End: Original strand, 44000761 - 44001348
Alignment:
| Q |
72 |
agtgtgcgagctgccatgatgagagcacgtgaatgtgattgcctctcggtgtttcttgttcttgtaatgatttagtgataaaaaagaaacaaaacttatc |
171 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44000761 |
agtgtgcgagctgccatgatgagagcacgtgaatgtgattgcctgtcggtgtttcttgttcttgtaatgatttagtgataaaaaagaaacaaaacttatc |
44000860 |
T |
|
| Q |
172 |
aatgtgaaaaatgacttttcatatgcaccatttgtttggtaaccgttgttgttgttgatattaatgttatcgctaatatgatgtgaaatactactaactt |
271 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
44000861 |
aatgtgaaaaatgatttttcatatgcaccatttgtttggtaaccgttgttgttgttgatattaatcttatcgctaatatgatgtgaaatactactaactt |
44000960 |
T |
|
| Q |
272 |
acaagaaaccattgaaagagctatgtcattaattattgtattgaaaatcttgtggggttaattaatttgaagggttattattgaattcttgcttgtatta |
371 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44000961 |
acaagaaaccattgaaagagctatgtcattaattattgtattgaaaatcttgtggggttaattaatttgaagggttattattgaattcttgcttgtatta |
44001060 |
T |
|
| Q |
372 |
ataaagagagttgaaaaagtttgtctttctattaagaggaaatgatagcattattgagtagagagagttgggatgacgtttgtggcaggcagggacgttt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
44001061 |
ataaagagagttgaaaaagtttgtctttctattaagaggaaatgatagcattattgagtagagagagttgggatgacgtttgtggcaggcaggtacgttt |
44001160 |
T |
|
| Q |
472 |
ggagaaaagcgggaagaagacaaacacaaaggaaaattcgcttttgggaaaactcaaattcaagcctgttaatttggggaatcttaaatttaaagtgata |
571 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44001161 |
ggagaaaagcgggaagaagacaaacacaaagggaaattcgcttttgggaaaactcaaattcaagcctgttaatttggggaatcttaaatttaaagtgata |
44001260 |
T |
|
| Q |
572 |
aaaaa---tagtaatttttatgtatttattaagaggaaaggttatttaggtagctcatatggtttgcaaggggagagagtaggtggtact |
658 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
44001261 |
aaaaatagtagtaatttttatgtatttattaagaggaaaagtgatttaggtagctcatatggtttgcaaggg--gatagtaggtggtact |
44001348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University