View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_high_12 (Length: 476)
Name: NF19488_high_12
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 84
Target Start/End: Original strand, 16165474 - 16165541
Alignment:
| Q |
17 |
acacccaatgcaagacagacgagaagaggttcaactatacaatagagaaaggcaagtatcgatgaatg |
84 |
Q |
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| T |
16165474 |
acacccaattcaagacagacgagaagaggttcaactatgcaatagagaaaggcaagtatagataaatg |
16165541 |
T |
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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 148 - 182
Target Start/End: Original strand, 16165601 - 16165635
Alignment:
| Q |
148 |
tttgcgcaattaacacacttttcattgtagagtat |
182 |
Q |
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| T |
16165601 |
tttgcccaattaacacacttttcattgtagagtat |
16165635 |
T |
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