View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19488_high_13 (Length: 474)
Name: NF19488_high_13
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_high_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 7 - 458
Target Start/End: Original strand, 49816880 - 49817331
Alignment:
| Q |
7 |
tgataagaattgtagagaacgaatcaatctattttgacgagctgtatcgaaattcaaactgctgcttcttttgaattgccagaaatgtttggataacaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49816880 |
tgataagaattgtagagaacgaatcaatctattttgacgagctgtatcaaaattcaaactgctgcttcttttgaattgccagaaatgtttggataacaat |
49816979 |
T |
|
| Q |
107 |
ggcttctcttcttccacgtctgtttcatcagacagaaattctttaagcctcttcttcattactgtagttttttgaagaggctcaaagagttcattagctg |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
49816980 |
ggcttctcttcttccacgtctgtttcatcagacaggaattctttaagcctcttcttcattactgtagttttttgaagaggctcaaagaattcattagctg |
49817079 |
T |
|
| Q |
207 |
atgaatttttctttattggaacgataattccattggagataacnnnnnnnatttccattggaactatttttccatcggagaaaagttcatcagctgaaga |
306 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49817080 |
atgaatttttcttcattggaacgataattccattggagataactttttttatttccattggaactatttttccatcggagaaaagttcatcagctgaaga |
49817179 |
T |
|
| Q |
307 |
aaattgctgagaaaaacaattggtgatggagaaaacgaaatcggaggttgaatctaagagatgtaaatctgaacgaaggtgaagatcttcgacggggatt |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
49817180 |
gaattgctgagaaaaacaattggtgatggagaaaacgaaatcggaggttgaatctaagaggtgtaaatctgaccgaaggtgaagatcttcgacggggatt |
49817279 |
T |
|
| Q |
407 |
gaaccatttgaattctttaaatcatgtgagaatgaaattctaggactgaatc |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49817280 |
gaaccatttgaattctttaaatcatgtgagaatgaaattctaggactgaatc |
49817331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University