View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_high_14 (Length: 456)
Name: NF19488_high_14
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_high_14 |
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| [»] scaffold0321 (1 HSPs) |
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Alignment Details
Target: scaffold0321 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: scaffold0321
Description:
Target: scaffold0321; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 6 - 438
Target Start/End: Complemental strand, 8503 - 8068
Alignment:
| Q |
6 |
agtgagatgaattatgttgtagtgagagttattgatgatgcactaatatgtagtatttagtgagtcttccttcatgcat----tatatatagtgagtctt |
101 |
Q |
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| T |
8503 |
agtgagatgaattatgttgtagtgagagttattgatgatgcactaatatgtagtatttagtgagtcttccttcatgcatgcattatatatagtgagtctt |
8404 |
T |
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| Q |
102 |
cctttatgcattatatcatatgtaggaaaatgataaatgacgagaatgatgtaattataaatgatgcagttattgaaacaatgattgtttaaataatgtg |
201 |
Q |
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| T |
8403 |
tctttatgcattatatcatatttaggaaaatgataaatgacgagaatgatgtaattataaatgatgtagttattgaaacaatgattgtttaaatgatttg |
8304 |
T |
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| Q |
202 |
aacgatatagatatgattaatgatattttatgtatttaacaaagacgagggacttagatgttgtgagcttggagtacgacgaggaatccttctcgtcaac |
301 |
Q |
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| T |
8303 |
aacgatatagatatgattaatgatgttttatgtatt-aacaaagacgagggacttagatgttgtgagcttggagtacgacgaggaatccttctcgtcaac |
8205 |
T |
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| Q |
302 |
ctttattttcgttaggagtttatctagggtaaatgctctggttttgtaatactggaattgaggtttattttacttctaaaaccttgaatgttgcgattcn |
401 |
Q |
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| T |
8204 |
ctttcttttcattaggagtttatctagggtaaatgctctggttttgtaacactggaattgaggtttattttacttctaaaaccttgaatgttgagattct |
8105 |
T |
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| Q |
402 |
nnnnnnngaaaatcaattgatttgttgagatgatatg |
438 |
Q |
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| T |
8104 |
tttttttgaaaatcaattgatttgttgagatgatatg |
8068 |
T |
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Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 266 - 341
Target Start/End: Complemental strand, 3234084 - 3234009
Alignment:
| Q |
266 |
gagcttggagtacgacgaggaatccttctcgtcaacctttattttcgttaggagtttatctagggtaaatgctctg |
341 |
Q |
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| T |
3234084 |
gagcttagagtacgacgaagaatctttctcgtcaatccttcttttcattaggagtttattttgggtcaatgctctg |
3234009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 20806190 - 20806259
Alignment:
| Q |
255 |
ttagatgttgtgagcttggagtacgacgaggaatccttctcgtcaacctttattttcgttaggagtttat |
324 |
Q |
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| T |
20806190 |
ttagacgttgtgagcttgaagtacaacgaggagtctttctcgtcaatctttcttttcattagaagtttat |
20806259 |
T |
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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 350
Target Start/End: Original strand, 6882037 - 6882132
Alignment:
| Q |
255 |
ttagatgttgtgagcttggagtacgacgaggaatccttctcgtcaacctttattttcgttaggagtttatctagggtaaatgctctggttttgtaa |
350 |
Q |
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| T |
6882037 |
ttagacgttgtgagcttggagtacgacaaagagtctttctcgtcaatccttcctttcattaggagtttattttgggtcaacgctctgattctgtaa |
6882132 |
T |
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