View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_high_17 (Length: 420)
Name: NF19488_high_17
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_high_17 |
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| [»] scaffold0290 (1 HSPs) |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 20 - 407
Target Start/End: Complemental strand, 32145929 - 32145541
Alignment:
| Q |
20 |
attaccatactagaggcgaattccaatctctcataacttacttatgtaaagatacgtccatcctattcttaccatgcttttcatcgactatccgagtttt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32145929 |
attaccatactagaggcgaattccaatctctcataacttacttatgtaaagatacgtccatcctattcttaccatgcttttcatcgactatccgagtttt |
32145830 |
T |
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| Q |
120 |
tcttccttgaatttgatgcttcaaacttcttactcttctcatagtaattcttattccaacgtccaaggtttcatggattccgttaaaacctctaccattc |
219 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32145829 |
tcttccttgaatatgatgcttcaaacttcttactcttctcatagtaattcttattccaacgtccaaggtttcatggattccgttaaaacctctaccattc |
32145730 |
T |
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| Q |
220 |
aattcccactgc-ccactctgatttcatcagctgacctagttatagacatcaattcgttgagatgagtgagattgcatactccttctatcacatggtcat |
318 |
Q |
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||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
32145729 |
aattcccgttgcgccactctgatttcatcagctgacctagttatagacatcaattcgttgagatgagtgagactccatactccttctatcacatggtcat |
32145630 |
T |
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| Q |
319 |
cattctctgaggttcattgtgaatcctcatgctacgatccaatgaaataaccttacactcttttccgcttcctaaaagcgctacctttg |
407 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |
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| T |
32145629 |
cattctctgaggttcattgtgaatcctcgtgctacgatccaatgaaacaaccttacactcctttccgcttcctaaaagcgctacctttg |
32145541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 23457799 - 23457858
Alignment:
| Q |
98 |
tttcatcgactatccgagtttttcttccttgaatttgatgcttcaaacttcttactcttc |
157 |
Q |
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| T |
23457799 |
tttcatcgattatccgagctttgctaccttgaatttgatgcttcaaacttcttactcttc |
23457858 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0290 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0290
Description:
Target: scaffold0290; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 2645 - 2570
Alignment:
| Q |
76 |
tccatcctattcttaccatgcttttcatcgactatccgagtttttcttccttgaatttgatgcttcaaacttctta |
151 |
Q |
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|||||| ||||||||||| || |||||||||||||||||||||| || ||||||| || || |||||| ||||||| |
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| T |
2645 |
tccatcatattcttaccacgcctttcatcgactatccgagttttgctaccttgaacttaatacttcaaccttctta |
2570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0005 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 154
Target Start/End: Original strand, 19826 - 19940
Alignment:
| Q |
41 |
tccaatctctcataacttacttatgtaaagatacgtccatcctattcttaccatgcttttcatcgactatccgagtttttcttccttgaatttgatgctt |
140 |
Q |
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||||||||||| | ||||||||| |||||| || ||||||| | ||||| || || ||| ||||||||||||||||| || | ||||| |||||||| |
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| T |
19826 |
tccaatctctcttgacttacttaggtaaaggcacatccatcccactcttatcacgccttttatcgactatccgagtttcactactttgaacctgatgctt |
19925 |
T |
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| Q |
141 |
caa-acttcttactc |
154 |
Q |
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||| ||||||||||| |
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| T |
19926 |
caagacttcttactc |
19940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 41 - 154
Target Start/End: Complemental strand, 14819886 - 14819772
Alignment:
| Q |
41 |
tccaatctctcataacttacttatgtaaagatacgtccatcctattcttaccatgcttttcatcgactatccgagtttttcttccttgaatttgatgctt |
140 |
Q |
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||||||||||| | ||||||||| |||||| || ||||||| | ||||| || || ||| ||||||||||||||||| || | ||||| |||||||| |
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| T |
14819886 |
tccaatctctcttgacttacttaggtaaaggcacatccatcccactcttatcacgccttttatcgactatccgagtttcactactttgaacctgatgctt |
14819787 |
T |
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| Q |
141 |
caa-acttcttactc |
154 |
Q |
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||| ||||||||||| |
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| T |
14819786 |
caagacttcttactc |
14819772 |
T |
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