View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19488_high_20 (Length: 386)

Name: NF19488_high_20
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19488_high_20
NF19488_high_20
[»] chr7 (17 HSPs)
chr7 (46-367)||(23751901-23752214)
chr7 (46-169)||(4017729-4017852)
chr7 (31-169)||(29812598-29812737)
chr7 (40-169)||(7133212-7133342)
chr7 (46-131)||(23930220-23930305)
chr7 (46-170)||(38804488-38804613)
chr7 (50-131)||(5938477-5938558)
chr7 (50-127)||(17780061-17780138)
chr7 (92-174)||(24339695-24339777)
chr7 (98-169)||(598256-598327)
chr7 (54-169)||(41229237-41229348)
chr7 (46-164)||(43249994-43250118)
chr7 (115-169)||(43027404-43027459)
chr7 (98-170)||(21880200-21880272)
chr7 (33-101)||(22683758-22683826)
chr7 (115-169)||(5409771-5409826)
chr7 (40-147)||(12278830-12278932)
[»] chr5 (23 HSPs)
chr5 (33-160)||(43554510-43554636)
chr5 (65-165)||(36577616-36577715)
chr5 (39-107)||(39695996-39696064)
chr5 (59-169)||(26205694-26205805)
chr5 (99-169)||(17123097-17123166)
chr5 (52-131)||(25863211-25863290)
chr5 (43-167)||(7997108-7997227)
chr5 (53-127)||(14574027-14574100)
chr5 (97-169)||(2419913-2419986)
chr5 (98-166)||(39268541-39268609)
chr5 (51-107)||(5467975-5468031)
chr5 (98-169)||(43564929-43565000)
chr5 (85-146)||(21137729-21137789)
chr5 (40-110)||(18607091-18607161)
chr5 (92-169)||(21522803-21522880)
chr5 (92-169)||(21533369-21533446)
chr5 (53-165)||(23220991-23221099)
chr5 (92-145)||(36642716-36642768)
chr5 (93-169)||(39698595-39698671)
chr5 (98-169)||(17393305-17393377)
chr5 (92-147)||(21542083-21542138)
chr5 (98-169)||(21576685-21576756)
chr5 (46-94)||(42469222-42469270)
[»] chr4 (23 HSPs)
chr4 (39-171)||(3144585-3144717)
chr4 (46-171)||(24343508-24343634)
chr4 (46-165)||(20743210-20743336)
chr4 (84-169)||(53381530-53381616)
chr4 (65-169)||(23386166-23386277)
chr4 (46-169)||(18513175-18513299)
chr4 (98-169)||(23292926-23292997)
chr4 (28-96)||(47191001-47191069)
chr4 (92-169)||(19482721-19482798)
chr4 (52-110)||(31243542-31243600)
chr4 (92-168)||(30982808-30982884)
chr4 (75-146)||(944625-944697)
chr4 (281-325)||(4926649-4926693)
chr4 (122-172)||(715542-715593)
chr4 (122-172)||(752868-752919)
chr4 (46-169)||(7012067-7012197)
chr4 (54-145)||(6273953-6274050)
chr4 (33-78)||(29205432-29205477)
chr4 (123-171)||(37203324-37203373)
chr4 (120-148)||(11326592-11326620)
chr4 (133-169)||(18844423-18844459)
chr4 (131-171)||(36635411-36635451)
chr4 (54-94)||(49659533-49659573)
[»] chr8 (23 HSPs)
chr8 (52-169)||(39820436-39820547)
chr8 (35-168)||(13009423-13009562)
chr8 (46-169)||(30067968-30068086)
chr8 (92-169)||(29510233-29510310)
chr8 (31-170)||(40063937-40064082)
chr8 (48-104)||(35431140-35431196)
chr8 (51-118)||(8017492-8017559)
chr8 (52-107)||(13845241-13845296)
chr8 (46-167)||(44067517-44067644)
chr8 (46-104)||(1676713-1676771)
chr8 (92-169)||(15816058-15816135)
chr8 (92-169)||(22652029-22652106)
chr8 (12-70)||(12627026-12627084)
chr8 (93-169)||(34450961-34451037)
chr8 (46-114)||(3658148-3658216)
chr8 (134-170)||(11927014-11927050)
chr8 (52-147)||(14513130-14513226)
chr8 (98-169)||(17751703-17751775)
chr8 (98-169)||(17760690-17760762)
chr8 (98-169)||(24413499-24413570)
chr8 (51-114)||(26799833-26799894)
chr8 (46-114)||(26915230-26915298)
chr8 (98-169)||(36450694-36450765)
[»] chr1 (25 HSPs)
chr1 (46-169)||(42004882-42005005)
chr1 (44-131)||(6936373-6936460)
chr1 (33-169)||(40747707-40747844)
chr1 (92-169)||(40917802-40917879)
chr1 (37-103)||(6573981-6574047)
chr1 (120-169)||(34741916-34741965)
chr1 (92-169)||(18556385-18556462)
chr1 (92-169)||(47989550-47989627)
chr1 (51-147)||(351040-351137)
chr1 (93-169)||(6427518-6427594)
chr1 (91-171)||(32899931-32900012)
chr1 (98-169)||(32461393-32461464)
chr1 (98-169)||(37598879-37598950)
chr1 (24-108)||(39101178-39101262)
chr1 (92-169)||(9828097-9828174)
chr1 (44-102)||(22794080-22794138)
chr1 (98-167)||(42359391-42359460)
chr1 (93-169)||(15765800-15765877)
chr1 (46-106)||(21145467-21145528)
chr1 (53-167)||(1486646-1486760)
chr1 (98-169)||(9690213-9690285)
chr1 (95-146)||(17831485-17831537)
chr1 (39-79)||(23440004-23440044)
chr1 (280-320)||(34673835-34673875)
chr1 (46-101)||(48415728-48415784)
[»] chr3 (26 HSPs)
chr3 (46-168)||(15864834-15864950)
chr3 (44-169)||(27903631-27903757)
chr3 (46-146)||(14223811-14223911)
chr3 (44-169)||(21211287-21211413)
chr3 (46-169)||(25074790-25074914)
chr3 (44-131)||(12704630-12704717)
chr3 (43-165)||(25651969-25652092)
chr3 (40-131)||(25326421-25326512)
chr3 (46-169)||(8903433-8903554)
chr3 (92-169)||(41961579-41961656)
chr3 (50-169)||(52369780-52369906)
chr3 (52-122)||(25892467-25892537)
chr3 (92-167)||(4987222-4987297)
chr3 (98-172)||(20503513-20503587)
chr3 (46-167)||(24204983-24205099)
chr3 (98-169)||(55401123-55401194)
chr3 (55-144)||(51512142-51512232)
chr3 (120-172)||(11610578-11610631)
chr3 (93-169)||(14209167-14209243)
chr3 (31-104)||(25365448-25365521)
chr3 (121-169)||(34185052-34185101)
chr3 (93-168)||(14216946-14217021)
chr3 (93-168)||(14223075-14223150)
chr3 (53-167)||(29508452-29508567)
chr3 (50-98)||(33006828-33006876)
chr3 (98-169)||(40993275-40993346)
[»] chr2 (14 HSPs)
chr2 (46-168)||(23354582-23354710)
chr2 (46-167)||(23354926-23355053)
chr2 (33-107)||(25544469-25544543)
chr2 (92-174)||(37419796-37419878)
chr2 (46-133)||(37986780-37986867)
chr2 (46-169)||(11307934-11308061)
chr2 (51-131)||(24011042-24011122)
chr2 (92-171)||(26769564-26769643)
chr2 (92-169)||(35056921-35056998)
chr2 (51-146)||(38919212-38919313)
chr2 (102-162)||(2846854-2846916)
chr2 (98-167)||(2438661-2438730)
chr2 (92-168)||(44860373-44860449)
chr2 (46-106)||(10535757-10535817)
[»] chr6 (24 HSPs)
chr6 (46-169)||(34446566-34446690)
chr6 (46-108)||(6389744-6389806)
chr6 (43-125)||(17168442-17168524)
chr6 (48-171)||(26247429-26247552)
chr6 (11-107)||(19602178-19602276)
chr6 (46-104)||(12086345-12086403)
chr6 (46-166)||(12235462-12235577)
chr6 (92-175)||(8365442-8365525)
chr6 (98-169)||(4877991-4878061)
chr6 (92-169)||(16766750-16766827)
chr6 (124-169)||(6389806-6389851)
chr6 (122-174)||(12868611-12868664)
chr6 (28-96)||(7569176-7569244)
chr6 (92-171)||(9107297-9107376)
chr6 (120-172)||(28648353-28648405)
chr6 (98-173)||(34595182-34595257)
chr6 (46-93)||(7625123-7625170)
chr6 (120-166)||(9025448-9025495)
chr6 (21-107)||(30781291-30781377)
chr6 (278-311)||(4889131-4889164)
chr6 (97-169)||(10339054-10339126)
chr6 (53-167)||(26178620-26178732)
chr6 (98-169)||(28152146-28152217)
chr6 (98-169)||(28715343-28715414)
[»] scaffold0003 (1 HSPs)
scaffold0003 (92-172)||(241647-241727)
[»] scaffold0057 (1 HSPs)
scaffold0057 (93-169)||(24078-24155)
[»] scaffold0652 (1 HSPs)
scaffold0652 (98-168)||(403-473)
[»] scaffold0199 (1 HSPs)
scaffold0199 (46-104)||(1950-2008)
[»] scaffold0793 (1 HSPs)
scaffold0793 (122-172)||(4818-4869)
[»] scaffold0598 (1 HSPs)
scaffold0598 (48-105)||(8052-8109)
[»] scaffold0450 (1 HSPs)
scaffold0450 (92-172)||(8561-8641)
[»] scaffold0019 (1 HSPs)
scaffold0019 (93-169)||(71779-71855)


Alignment Details
Target: chr7 (Bit Score: 192; Significance: 1e-104; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 46 - 367
Target Start/End: Original strand, 23751901 - 23752214
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacacgggacacgcctaat 145  Q
    |||||||||||||||||||||||||||||||||| || |||||||||||||||||||||      ||||||||||||||| |||||||||||||||||||    
T  23751901 acacggataataatttgataaaatgatataatttagtgtaatcataggtgtcgtgtcgg------acaccgacgcgtgtcagacacgggacacgcctaat 23751994  T
Q  146 ccggtaagtgtccgtgcttcatagattgttgctctttaaacaacctctgattgag-gnnnnnnnntccaactatggatggctgagaggccgttataactg 244  Q
    ||| |||||||| ||||||||||||| ||||||||||||||||||||| |||||| |        |||||||||||||||||||||||||||||  ||||    
T  23751995 ccgataagtgtctgtgcttcatagat-gttgctctttaaacaacctctaattgagagaaaaaaaatccaactatggatggctgagaggccgtta--actg 23752091  T
Q  245 atgctcacccnnnnnnncggtagttaagtggcaacattttttagatcggttcaattactttttaaatcagtttaactgattggtagttaattatcgttat 344  Q
     |||||||||       |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||     
T  23752092 ttgctcacccaaaaaaacggtagttaagtggcaacattttttagatcggttcaatcactttttaaatcagtttaactgattggtagttaattatcgttag 23752191  T
Q  345 aagtatttgtgttggttcagagt 367  Q
    |||||||||||||||||||||||    
T  23752192 aagtatttgtgttggttcagagt 23752214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 46 - 169
Target Start/End: Complemental strand, 4017852 - 4017729
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacacgggacacgcctaat 145  Q
    |||||||||||||||||| |||| |||||||||| || |||||||| ||||||||| ||||| ||||||||||| ||||| ||||||| |||||||||||    
T  4017852 acacggataataatttgagaaaacgatataatttagtgtaatcataagtgtcgtgttggtgtcggacaccgacgtgtgtctgacacggaacacgcctaat 4017753  T
Q  146 ccggtaagtgtccgtgcttcatag 169  Q
    |    |||||| ||||||||||||    
T  4017752 ctaaaaagtgttcgtgcttcatag 4017729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 31 - 169
Target Start/End: Complemental strand, 29812737 - 29812598
Alignment:
Q  31 acgacacggacaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgc-gtgtccgac 129  Q
    |||||||||||||| || || |||||||||||| ||||||||||||||| || |||||||||||||||||||||||| ||   | |   | |   |||||    
T  29812737 acgacacggacaccgacccgtataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcggtgtcggtgtcggacaccgac 29812638  T
Q  130 acgggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  29812637 acgggacacgcctaatccgagaagtgtccgtgcttcatag 29812598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 40 - 169
Target Start/End: Complemental strand, 7133342 - 7133212
Alignment:
Q  40 acaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacac 138  Q
    ||||| |||| ||| ||||||||| ||||||| ||||||  || ||||||||||||  |||||||||| ||||||||||||||||||||||| |||||||    
T  7133342 acaccgacacagatgataatttgagaaaatgacataattcagtgtaatcataggtggtgtgtcggtgtcggacaccgacgcgtgtccgacactgggacac 7133243  T
Q  139 gcctaatccggtaagtgtccgtgcttcatag 169  Q
     ||||||| |   || |||||||||||||||    
T  7133242 acctaatctgaggagcgtccgtgcttcatag 7133212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 131
Target Start/End: Original strand, 23930220 - 23930305
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac 131  Q
    ||||||||| |||||||| ||||||| ||||||  || ||||||||||||| |||||||||| ||| ||||| |||||||||||||    
T  23930220 acacggatagtaatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcggataccgatgcgtgtccgacac 23930305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 170
Target Start/End: Complemental strand, 38804613 - 38804488
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgac-acgggacacgcctaa 144  Q
    |||||||||||||||| | ||||||| |||||   |  |||||||||||||||||| ||||| ||||||||||| |||||||||  ||||||| ||||||    
T  38804613 acacggataataatttcagaaaatgacataatccagggtaatcataggtgtcgtgttggtgtcggacaccgacgtgtgtccgacgccgggacatgcctaa 38804514  T
Q  145 tccggtaagtgtccgtgcttcataga 170  Q
    ||||   |||||  ||||||||||||    
T  38804513 tccgaggagtgtatgtgcttcataga 38804488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 131
Target Start/End: Original strand, 5938477 - 5938558
Alignment:
Q  50 ggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac 131  Q
    |||||||||||||||||||| | ||||||  || |||| |||||||| ||||||||||  |||||||| |||||||||||||    
T  5938477 ggataataatttgataaaataacataattcagtataattataggtgttgtgtcggtgtcagacaccgatgcgtgtccgacac 5938558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 17780138 - 17780061
Alignment:
Q  50 ggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccg 127  Q
    |||||||||||| | ||||||| |||||| | | |||| ||||||||||||||||||| | |||||||||||||||||    
T  17780138 ggataataatttaagaaaatgacataattctatgtaataataggtgtcgtgtcggtgtcgaacaccgacgcgtgtccg 17780061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 24339695 - 24339777
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatagattgt 174  Q
    |||||||||||||||| |||||| ||| ||| |||||||| |||||||||||||||||   |||| ||||||||||||||||||    
T  24339695 ggtgtcgtgtcggtgtcggacac-gacacgtatccgacaccgggacacgcctaatccgaggagtgcccgtgcttcatagattgt 24339777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 598256 - 598327
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||||||||  ||||| ||| |||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  598256 gtgtcggtgtcagacac-gacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 54 - 169
Target Start/End: Complemental strand, 41229348 - 41229237
Alignment:
Q  54 aataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacacgg-gacacgcctaatccggtaa 152  Q
    |||||||||| ||||||| |||||| ||| |||||||||| ||||     |||| ||||||| ||||||||||| ||| | ||||||||||||  |  ||    
T  41229348 aataatttgagaaaatgacataattctgtataatcataggcgtcg-----gtgtcggacaccaacgcgtgtccgtcactgcgacacgcctaatatgagaa 41229254  T
Q  153 gtgtccgtgcttcatag 169  Q
    |||||||||||||||||    
T  41229253 gtgtccgtgcttcatag 41229237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 164
Target Start/End: Original strand, 43249994 - 43250118
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggt-----gttggacaccgacgcgtgtccgaca-cgggacacg 139  Q
    |||||||||||||||||| ||||||| |||||   || |||| ||| |||||||||||||     || |||||| ||||||||||||||| | |||||||    
T  43249994 acacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtcgcgtcggacactgacgcgtgtccgacaccaggacacg 43250093  T
Q  140 cctaatccggtaagtgtccgtgctt 164  Q
    |||||| ||   |||||||||||||    
T  43250094 cctaattcgaggagtgtccgtgctt 43250118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 43027459 - 43027404
Alignment:
Q  115 cgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||| |||||||||||| ||||||||||||||||| | ||||||||||||||||||    
T  43027459 cgacacgtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 170
Target Start/End: Original strand, 21880200 - 21880272
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacacg-ggacacgcctaatccggtaagtgtccgtgcttcataga 170  Q
    |||||||||| |||||| ||| | ||||||||||  ||||||||||||||||  ||||||||||||||||||||    
T  21880200 gtgtcggtgtcggacac-gacacatgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcataga 21880272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 101
Target Start/End: Complemental strand, 22683826 - 22683758
Alignment:
Q  33 gacacggacaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgt 101  Q
    ||||| |||||| | |||||||||||||||| || |||||||||||  ||  |||||||||||||||||    
T  22683826 gacaccgacaccgagacggataataatttgagaatatgatataattcagtgcaatcataggtgtcgtgt 22683758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 115 - 169
Target Start/End: Complemental strand, 5409826 - 5409771
Alignment:
Q  115 cgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||| |||||||||||| |||||||||||||||||   ||||||||||||||||||    
T  5409826 cgacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 5409771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 147
Target Start/End: Original strand, 12278830 - 12278932
Alignment:
Q  40 acaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacac 138  Q
    |||||||||| ||||||||||| | ||||||| ||||||  || |||| ||| ||||||||||      ||||||| ||||||||| |||| ||||||||    
T  12278830 acaccaacactgataataatttaagaaaatgacataattcagtgtaattatatgtgtcgtgtc------ggacaccaacgcgtgtctgacaccgggacac 12278923  T
Q  139 gcctaatcc 147  Q
     ||||||||    
T  12278924 acctaatcc 12278932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 33 - 160
Target Start/End: Original strand, 43554510 - 43554636
Alignment:
Q  33 gacacggacaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacacg 132  Q
    ||||||||||| | |||| |||||||||||| ||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  43554510 gacacggacacga-cacgtataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcggacaccgacgcgtgtccgacacg 43554608  T
Q  133 ggacacgcctaatccggtaagtgtccgt 160  Q
    ||||||||||||||||  ||||||||||    
T  43554609 ggacacgcctaatccgagaagtgtccgt 43554636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 65 - 165
Target Start/End: Complemental strand, 36577715 - 36577616
Alignment:
Q  65 aaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacacgggacacgcctaatccggtaagtgtccgtgctt 164  Q
    ||||||||||||||| || |||| ||| ||||||||||||||| | ||||||| |||| |||||||||||| |||||||||||   ||||||| ||||||    
T  36577715 aaaatgatataatttagtataattatatgtgtcgtgtcggtgtcg-acaccgatgcgtatccgacacgggatacgcctaatccaagaagtgtctgtgctt 36577617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 107
Target Start/End: Complemental strand, 39696064 - 39695996
Alignment:
Q  39 gacaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgt 107  Q
    |||||| |||| || |||||||||| ||||||||||||||| || ||||||||||||||||||||||||    
T  39696064 gacaccgacaccgacaataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgt 39695996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 59 - 169
Target Start/End: Complemental strand, 26205805 - 26205694
Alignment:
Q  59 tttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaatccggtaagtgtc 157  Q
    ||||| ||||||| ||||||  || |||||||||||||||||| ||||| ||||||| |||||| ||||||| |||||||| | ||||||   | |||||    
T  26205805 tttgagaaaatgacataattcagtgtaatcataggtgtcgtgttggtgtcggacaccaacgcgtatccgacaccgggacacacgtaatccaaaaggtgtc 26205706  T
Q  158 cgtgcttcatag 169  Q
    ||||||||||||    
T  26205705 cgtgcttcatag 26205694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 99 - 169
Target Start/End: Original strand, 17123097 - 17123166
Alignment:
Q  99 tgtcggtgttggacaccgacgcgtgtccgacacgggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||||||||| ||  | |||||||||||||||||||||||||||   ||||||||||||||||||    
T  17123097 tgtcggtgttggacac-gaaacatgtccgacacgggacacgcctaatccgaggagtgtccgtgcttcatag 17123166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 131
Target Start/End: Original strand, 25863211 - 25863290
Alignment:
Q  52 ataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac 131  Q
    |||||||||||| ||||||||||||||  || |||| ||| |||||||||| |||| || |||||| ||||||| |||||    
T  25863211 ataataatttgagaaaatgatataattcagtgtaattataagtgtcgtgtcagtgtcgggcaccgatgcgtgtctgacac 25863290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 167
Target Start/End: Complemental strand, 7997227 - 7997108
Alignment:
Q  43 ccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcc 141  Q
    ||||||||||||||||||||| |||||||||||||   || |||| ||| ||||||||||      |||||| ||||||||||||||| | |||||| ||    
T  7997227 ccaacacggataataatttgagaaaatgatataatacagtgtaattataagtgtcgtgtc------ggacactgacgcgtgtccgacatcaggacacacc 7997134  T
Q  142 taatccggtaagtgtccgtgcttcat 167  Q
    |||| ||  ||||||  |||||||||    
T  7997133 taattcgagaagtgtttgtgcttcat 7997108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 14574100 - 14574027
Alignment:
Q  53 taataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccg 127  Q
    |||||||||||| |||||||||||||  || |||| |||||| ||||||| |||| |||| ||||||||||||||    
T  14574100 taataatttgatgaaatgatataattcagtgtaattataggt-tcgtgtcagtgtcggacgccgacgcgtgtccg 14574027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 97 - 169
Target Start/End: Original strand, 2419913 - 2419986
Alignment:
Q  97 cgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||| |||||  |||||||| ||||||||||| | ||||||| ||||||||| | ||||||||||||||||||    
T  2419913 cgtgttggtgtcagacaccgatgcgtgtccgaccccgggacacacctaatccgatgagtgtccgtgcttcatag 2419986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 39268609 - 39268541
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttca 166  Q
    ||||||||||||||||| |||  ||||||||||| |||||||||||||||||   |||||||||||||||    
T  39268609 gtgtcggtgttggacac-gacatgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 39268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 107
Target Start/End: Complemental strand, 5468031 - 5467975
Alignment:
Q  51 gataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgt 107  Q
    ||||||||||||||||||| | ||||||  || |||| |||||||||||||||||||    
T  5468031 gataataatttgataaaatcacataattcagtgtaattataggtgtcgtgtcggtgt 5467975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 43564929 - 43565000
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||| |||||| |||  ||||||||| | |||||||||||||||||  |||||||||||||||||||    
T  43564929 gtgtcggtgtcggacac-gacatgtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcatag 43565000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 85 - 146
Target Start/End: Original strand, 21137729 - 21137789
Alignment:
Q  85 aatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaatc 146  Q
    |||||||||||||||||||  || ||||||| |||||||||||||| |||||||| |||||||    
T  21137729 aatcataggtgtcgtgtcg--gtcggacaccaacgcgtgtccgacaccgggacacacctaatc 21137789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 110
Target Start/End: Complemental strand, 18607161 - 18607091
Alignment:
Q  40 acaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttgg 110  Q
    ||||| ||| |||||||||||||| ||||| | ||||||   | ||||||||||||||||||| |||||||    
T  18607161 acaccgacatggataataatttgagaaaataacataattcaatgtaatcataggtgtcgtgtctgtgttgg 18607091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 21522803 - 21522880
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||||||||| ||||| |||| |||||||| || |||||||||||||||||    ||||||||||| ||||||    
T  21522803 ggtgtcgtgtcggtgtcggaca-cgacacgtgtccggcaccgggacacgcctaatccaaagagtgtccgtgcatcatag 21522880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 21533369 - 21533446
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||||||||| ||||| |||| |||||||| || |||||||||||||||||    ||||||||||| ||||||    
T  21533369 ggtgtcgtgtcggtgtcggaca-cgacacgtgtccggcaccgggacacgcctaatccaaagagtgtccgtgcatcatag 21533446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 165
Target Start/End: Original strand, 23220991 - 23221099
Alignment:
Q  53 taataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggta 151  Q
    ||||||||||||||||| | ||||||| || | ||||||      |||||||||||||||| | | |||||||| |||| ||||||||||||||||| |     
T  23220991 taataatttgataaaatcacataatttagtgttatcata-----tgtgtcggtgttggacatcaatgcgtgtccaacactgggacacgcctaatccgatg 23221085  T
Q  152 agtgtccgtgcttc 165  Q
    ||  ||||||||||    
T  23221086 agcatccgtgcttc 23221099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 36642768 - 36642716
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacacgggacacgcctaat 145  Q
    |||||| ||| ||||| |||||| ||| ||||||||||||||||||||||||||    
T  36642768 ggtgtcatgttggtgtcggacac-gacacgtgtccgacacgggacacgcctaat 36642716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 39698595 - 39698671
Alignment:
Q  93 gtgtcgtgtcggtgttggacaccgacgcgtgtccgacacgg-gacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||||||||||||| |||||| |||  || |||||||| | |||||||||||||||   ||||||||||||||||||    
T  39698595 gtgtcgtgtcggtgtcggacac-gacatgtatccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 39698671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 17393377 - 17393305
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||||||| |||||||||||| |||||||||| |||||||| | |||||||   | ||| ||||||||||||    
T  17393377 gtgtcggtggtggacaccgacgtgtgtccgacaccgggacactcgtaatccgaggaatgttcgtgcttcatag 17393305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 21542083 - 21542138
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaatcc 147  Q
    |||||||||||||||| ||||| |||| ||||||||||| ||||||||||| |||||    
T  21542083 ggtgtcgtgtcggtgtcggaca-cgacacgtgtccgacaccgggacacgccgaatcc 21542138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 21576756 - 21576685
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||| ||| |||||| ||| |||||| ||||| |||||||||||||||||   ||||||||||||||||||    
T  21576756 gtgtcgatgtcggacac-gacacgtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 94
Target Start/End: Original strand, 42469222 - 42469270
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggt 94  Q
    |||||||||||||||||| ||||||| ||| ||| || |||||||||||    
T  42469222 acacggataataatttgagaaaatgacatattttagtgtaatcataggt 42469270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 81; Significance: 5e-38; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 39 - 171
Target Start/End: Complemental strand, 3144717 - 3144585
Alignment:
Q  39 gacaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacacgggacac 138  Q
    |||||| |||||||||||||||| | ||||||||||||||| || ||||||||||||||||||||||||  |||||| |||||||||| ||||| |||||    
T  3144717 gacacctacacggataataatttcagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcagacaccaacgcgtgtccaacacgagacac 3144618  T
Q  139 gcctaatccggtaagtgtccgtgcttcatagat 171  Q
     |||||||||  |||||||||||||||||||||    
T  3144617 acctaatccgagaagtgtccgtgcttcatagat 3144585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 46 - 171
Target Start/End: Original strand, 24343508 - 24343634
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaa 144  Q
    |||||||||||||||||| ||||| | ||||||  || |||| |||||||||||||||||||  ||||||||||||||||||||| |||||||||||||     
T  24343508 acacggataataatttgagaaaattacataattcagtgtaattataggtgtcgtgtcggtgtccgacaccgacgcgtgtccgacaccgggacacgcctat 24343607  T
Q  145 tccggtaagtgtccgtgcttcatagat 171  Q
    || |   ||||||||||||||||||||    
T  24343608 tctgaggagtgtccgtgcttcatagat 24343634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 165
Target Start/End: Complemental strand, 20743336 - 20743210
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttg------gacaccgacgcgtgtccgaca-cgggacac 138  Q
    |||||||||||||||||| ||||||| ||||||  || ||||||||||||| |||||||||| |      ||||||||| ||||||||||| ||| ||||    
T  20743336 acacggataataatttgagaaaatgacataattcagtgtaatcataggtgttgtgtcggtgtcgatgtcagacaccgacacgtgtccgacaccggaacac 20743237  T
Q  139 gcctaatccggtaagtgtccgtgcttc 165  Q
      |||||||| | ||||||||||||||    
T  20743236 atctaatccgatgagtgtccgtgcttc 20743210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 84 - 169
Target Start/End: Complemental strand, 53381616 - 53381530
Alignment:
Q  84 taatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||| ||||| ||||||||||||| |||||| ||||||| ||||||| |||||||| |||||||||   ||||||||||||||||||    
T  53381616 taattataggcgtcgtgtcggtgtcggacactgacgcgtatccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 53381530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 65 - 169
Target Start/End: Original strand, 23386166 - 23386277
Alignment:
Q  65 aaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacacc-------gacgcgtgtccgacacgggacacgcctaatccggtaagtgtc 157  Q
    ||||||||||||||| || |||||||||||||| ||||||||| |||||||       || |||||||||||| |||||| |||||||| |   ||||||    
T  23386166 aaaatgatataatttagtgtaatcataggtgtcatgtcggtgtcggacaccaatgtgtgatgcgtgtccgacaagggacatgcctaatcagaggagtgtc 23386265  T
Q  158 cgtgcttcatag 169  Q
    ||||||||||||    
T  23386266 cgtgcttcatag 23386277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 169
Target Start/End: Complemental strand, 18513299 - 18513175
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtc-gtgtcggtgttggacaccgacgcgtgtccgacacg-ggacacgccta 143  Q
    |||| ||||||||||||| ||||||| ||||||   | |||||||| ||||| |||| | ||| ||||||||||| |||||||||||  |||||||||||    
T  18513299 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttg-tgtcggacaccgacgtgtgtccgacaccaggacacgccta 18513201  T
Q  144 atccggtaagtgtccgtgcttcatag 169  Q
    ||| |   ||||||||||||||||||    
T  18513200 atctgaggagtgtccgtgcttcatag 18513175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 23292997 - 23292926
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||| |||||| ||| |||||||||||| |||||||||||||||||   ||||||||||||||||||    
T  23292997 gtgtcggtgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 47191069 - 47191001
Alignment:
Q  28 gatacgacacggacaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgt 96  Q
    ||||||||||||||||| ||| |||||||||||||  ||||||| ||||||| || ||||| |||||||    
T  47191069 gatacgacacggacaccgacatggataataatttgcgaaaatgacataatttagtgtaatcctaggtgt 47191001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 19482721 - 19482798
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||||||| ||||||| |||| |||||||||||| ||||||| |||||||||   ||||| ||||||||||||    
T  19482721 ggtgtcgtgtcggtattggaca-cgacacgtgtccgacactgggacacacctaatccgaggagtgttcgtgcttcatag 19482798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 52 - 110
Target Start/End: Complemental strand, 31243600 - 31243542
Alignment:
Q  52 ataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttgg 110  Q
    |||||||||||| ||||||| ||||||  || |||||||||||||| ||||||||||||    
T  31243600 ataataatttgagaaaatgacataattcagtgtaatcataggtgtcatgtcggtgttgg 31243542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 30982884 - 30982808
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcata 168  Q
    ||||||||||||||||  ||||| ||| |||||||||||| ||||||||||||||||    |||||||||||||||||    
T  30982884 ggtgtcgtgtcggtgtcagacac-gacacgtgtccgacaccgggacacgcctaatccaaagagtgtccgtgcttcata 30982808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 75 - 146
Target Start/End: Complemental strand, 944697 - 944625
Alignment:
Q  75 aattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaatc 146  Q
    ||||| || |||| |||||||||||||| |||| | |||| ||||||||||||||| |||||||| |||||||    
T  944697 aatttagtgtaattataggtgtcgtgtcagtgtcgaacacagacgcgtgtccgacaccgggacacacctaatc 944625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 281 - 325
Target Start/End: Complemental strand, 4926693 - 4926649
Alignment:
Q  281 ttttttagatcggttcaattactttttaaatcagtttaactgatt 325  Q
    ||||||||||||||  ||| |||||||||||||||||||||||||    
T  4926693 ttttttagatcggtcaaatcactttttaaatcagtttaactgatt 4926649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 715593 - 715542
Alignment:
Q  122 tgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatagatt 172  Q
    |||||||||| |||||||||||||||||   |||||||||||||||||||||    
T  715593 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagatt 715542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 752919 - 752868
Alignment:
Q  122 tgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatagatt 172  Q
    |||||||||| |||||||||||||||||   |||||||||||||||||||||    
T  752919 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagatt 752868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 169
Target Start/End: Original strand, 7012067 - 7012197
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcg------tgtcggtgttggacaccgacgcgtgtccgaca-cgggacac 138  Q
    |||| ||||||||||||| ||||||| ||||||  || | ||||||||| |||      ||||||||| |||||||||||||| ||||||| ||||  ||    
T  7012067 acaccgataataatttgagaaaatgacataattcagtgtgatcataggtatcggtgttgtgtcggtgtcggacaccgacgcgtatccgacaccggggaac 7012166  T
Q  139 gcctaatccggtaagtgtccgtgcttcatag 169  Q
     |||||| ||   ||||||||||||||||||    
T  7012167 acctaatgcgaggagtgtccgtgcttcatag 7012197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 54 - 145
Target Start/End: Original strand, 6273953 - 6274050
Alignment:
Q  54 aataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttg------gacaccgacgcgtgtccgacacgggacacgcctaat 145  Q
    |||||||||| ||||||||||||||| || |||| ||||  ||||||||||||| |      |||| |||||| ||||||||||  ||||||||||||    
T  6273953 aataatttgagaaaatgatataatttagtgtaattatagtcgtcgtgtcggtgtcggtgtcagacatcgacgcatgtccgacacaagacacgcctaat 6274050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 33 - 78
Target Start/End: Original strand, 29205432 - 29205477
Alignment:
Q  33 gacacggacaccaacacggataataatttgataaaatgatataatt 78  Q
    ||||||||||||||||||| ||||||||||| ||||| | ||||||    
T  29205432 gacacggacaccaacacggctaataatttgaaaaaatcacataatt 29205477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 171
Target Start/End: Original strand, 37203324 - 37203373
Alignment:
Q  123 gtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatagat 171  Q
    ||||||||| |||||||| ||||||||  |||||||||||||||||||||    
T  37203324 gtccgacaccgggacacgtctaatccgagaagtgtccgtgcttcatagat 37203373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 148
Target Start/End: Complemental strand, 11326620 - 11326592
Alignment:
Q  120 cgtgtccgacacgggacacgcctaatccg 148  Q
    |||||||||||||||||||||||||||||    
T  11326620 cgtgtccgacacgggacacgcctaatccg 11326592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 133 - 169
Target Start/End: Complemental strand, 18844459 - 18844423
Alignment:
Q  133 ggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||||||||||||||  |||||||||||||||||||    
T  18844459 ggacacgcctaatccgagaagtgtccgtgcttcatag 18844423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 36635411 - 36635451
Alignment:
Q  131 cgggacacgcctaatccggtaagtgtccgtgcttcatagat 171  Q
    ||||||||||||||||||   ||||||||||||||||||||    
T  36635411 cgggacacgcctaatccgaagagtgtccgtgcttcatagat 36635451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 54 - 94
Target Start/End: Complemental strand, 49659573 - 49659533
Alignment:
Q  54 aataatttgataaaatgatataattttgtttaatcataggt 94  Q
    |||||||||| ||||||||||||||| || |||||||||||    
T  49659573 aataatttgagaaaatgatataatttagtgtaatcataggt 49659533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 52 - 169
Target Start/End: Original strand, 39820436 - 39820547
Alignment:
Q  52 ataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacacgggacacgcctaatccggta 151  Q
    |||||||||||| ||||||||||||||| || |||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||  |    
T  39820436 ataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcgg------acaccgacgcgtgtccgacacgggacacgcctaatccgaga 39820529  T
Q  152 agtgtccgtgcttcatag 169  Q
    ||||||||||||||||||    
T  39820530 agtgtccgtgcttcatag 39820547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 35 - 168
Target Start/End: Complemental strand, 13009562 - 13009423
Alignment:
Q  35 cacggacaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttg------gacaccgacgcgtgtccga 128  Q
    |||||||||| |||||||||||||||||| ||||  ||||||||| || |||||||| ||||||||||||||| |      ||||||||||| |||||||    
T  13009562 cacggacaccgacacggataataatttgagaaaacaatataatttagtgtaatcataagtgtcgtgtcggtgtaggtgtcagacaccgacgcctgtccga 13009463  T
Q  129 cacgggacacgcctaatccggtaagtgtccgtgcttcata 168  Q
    |||||||||||||||||||    || ||||||||||||||    
T  13009462 cacgggacacgcctaatccaaggagcgtccgtgcttcata 13009423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 46 - 169
Target Start/End: Complemental strand, 30068086 - 30067968
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaa 144  Q
    |||||||||||||||||| ||||||| ||||||  || ||||| |||||| || |||||      | ||||||| ||||||||||| ||||||| |||||    
T  30068086 acacggataataatttgagaaaatgacataattcagtataatcgtaggtgccgagtcgg------ataccgacgtgtgtccgacactgggacacacctaa 30067993  T
Q  145 tccggtaagtgtccgtgcttcatag 169  Q
    |||| | ||||||||||||||||||    
T  30067992 tccgatgagtgtccgtgcttcatag 30067968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 29510310 - 29510233
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||| |||||||||| |||||| |||||||||||||||| ||||||| |||||||||   ||||||||||||||||||    
T  29510310 ggtgtagtgtcggtgtcggacac-gacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 29510233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 170
Target Start/End: Original strand, 40063937 - 40064082
Alignment:
Q  31 acgacacggacaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggaca-----ccgacgcgtgtc 125  Q
    |||||||||||||| ||||  |||||||||||| ||||||| ||||||   | |||||||||| |||||||||||||   |||     |||||| |||||    
T  40063937 acgacacggacaccgacaccaataataatttgagaaaatgacataattcattgtaatcataggcgtcgtgtcggtgtccaacacgtcgccgacgtgtgtc 40064036  T
Q  126 cgaca-cgggacacgcctaatccggtaagtgtccgtgcttcataga 170  Q
    ||||| ||||||||  ||||||||   |||||||||||| ||||||    
T  40064037 cgacaccgggacacatctaatccgaggagtgtccgtgctacataga 40064082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 48 - 104
Target Start/End: Complemental strand, 35431196 - 35431140
Alignment:
Q  48 acggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcgg 104  Q
    |||||||||||||||| ||||||| ||| ||| || |||||||||||||||||||||    
T  35431196 acggataataatttgagaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 35431140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 51 - 118
Target Start/End: Original strand, 8017492 - 8017559
Alignment:
Q  51 gataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgac 118  Q
    ||||||||| ||| ||||||| ||||||  || ||||||||| ||||||||| |||||||||||||||    
T  8017492 gataataatatgaaaaaatgacataattgagtgtaatcatagatgtcgtgtcagtgttggacaccgac 8017559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 52 - 107
Target Start/End: Original strand, 13845241 - 13845296
Alignment:
Q  52 ataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgt 107  Q
    |||||||||||| ||||||||||||||| |  ||||||||||||||||||| ||||    
T  13845241 ataataatttgagaaaatgatataatttagagtaatcataggtgtcgtgtctgtgt 13845296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 167
Target Start/End: Original strand, 44067517 - 44067644
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttg-----gacaccgacgcgtgtccgacacg-ggacacg 139  Q
    |||||||||||||||||| ||||||| |||||   || |||| ||| ||||||||||||||| |     ||||| || |||||||||||||  |||||||    
T  44067517 acacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcggtgtcgtgtcggacactgatgcgtgtccgacaccaggacacg 44067616  T
Q  140 cctaatccggtaagtgtccgtgcttcat 167  Q
    |||||| ||   ||||||||||||||||    
T  44067617 cctaattcgaggagtgtccgtgcttcat 44067644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 1676713 - 1676771
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcgg 104  Q
    |||||||||||||||||  ||||||| ||| ||| || |||||||||||||||||||||    
T  1676713 acacggataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 1676771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 15816135 - 15816058
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||| ||||| |||||| ||| ||  |||||||| |||||||||||||||||  |||||||||||||||||||    
T  15816135 ggtgtcgtgttggtgtcggacac-gacacgaatccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 15816058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 22652029 - 22652106
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||||||||| |||||| |||  ||||||||||| |||||||| ||||||||   ||||||||||||||||||    
T  22652029 ggtgtcgtgtcggtgtcggacac-gacatgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 70
Target Start/End: Original strand, 12627026 - 12627084
Alignment:
Q  12 acagacatggacatcagatacgacacggacaccaacacggataataatttgataaaatg 70  Q
    ||||||||||||| |||| | |||||||||||| |||| ||||||||| ||| ||||||    
T  12627026 acagacatggacaccagacatgacacggacaccgacacagataataatgtgagaaaatg 12627084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 169
Target Start/End: Complemental strand, 34451037 - 34450961
Alignment:
Q  93 gtgtcgtgtcggtgttggacaccgacgcgtgtccgacacggg-acacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||||||||||||| |||||| ||| |||||| |||||||| |||||||| ||||    ||||||||||||||||||    
T  34451037 gtgtcgtgtcggtgtcggacac-gacacgtgtctgacacggggacacgccttatccaaggagtgtccgtgcttcatag 34450961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 3658148 - 3658216
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacac 114  Q
    |||||||||||||||||| ||||| || || ||  || |||||||||||||||||| | ||| ||||||    
T  3658148 acacggataataatttgagaaaataatgtagttcagtgtaatcataggtgtcgtgttgatgtcggacac 3658216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 170
Target Start/End: Complemental strand, 11927050 - 11927014
Alignment:
Q  134 gacacgcctaatccggtaagtgtccgtgcttcataga 170  Q
    ||||||||||||||| | |||||||||||||||||||    
T  11927050 gacacgcctaatccgatgagtgtccgtgcttcataga 11927014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 147
Target Start/End: Complemental strand, 14513226 - 14513130
Alignment:
Q  52 ataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaatcc 147  Q
    |||||||||||| ||||| | ||||||  |  ||||||||| | | ||||||||||  ||||||||||| ||||||||| ||| |||| ||||||||    
T  14513226 ataataatttgagaaaattacataattcagcgtaatcatagatttggtgtcggtgtcagacaccgacgcatgtccgacaccggaacacacctaatcc 14513130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 17751703 - 17751775
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||| |||||| ||||| |  ||||||| |||||||||||||||||   |||||||| |||||||||    
T  17751703 gtgtcggtgtcggacacagacgcatagccgacaccgggacacgcctaatccgaggagtgtccgcgcttcatag 17751775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 17760690 - 17760762
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||| |||||| ||||| |  ||||||| |||||||||||||||||   |||||||| |||||||||    
T  17760690 gtgtcggtgtcggacacagacgcatagccgacaccgggacacgcctaatccgaggagtgtccgcgcttcatag 17760762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 24413570 - 24413499
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||| |||| |||||| || |||||||| ||| ||||||||| ||||||||  |||||||||||||||||||    
T  24413570 gtgtcagtgtcggacac-gatgcgtgtccaacagcgggacacgtctaatccgagaagtgtccgtgcttcatag 24413499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 114
Target Start/End: Complemental strand, 26799894 - 26799833
Alignment:
Q  51 gataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacac 114  Q
    ||||||||||| | ||||| | |||||||   ||||| ||||||||||||||||||||||||||    
T  26799894 gataataattttaaaaaataaaataattta--ttaattataggtgtcgtgtcggtgttggacac 26799833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 26915298 - 26915230
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacac 114  Q
    |||||||||| | ||||| ||||||| |||||||  | |||||| | ||||||||||||||| ||||||    
T  26915298 acacggataaaattttgagaaaatgacataatttaatgtaatcacaagtgtcgtgtcggtgtcggacac 26915230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 36450765 - 36450694
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacacg-ggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||| ||||| |||||| ||||||||||||||||  ||||||||||||||||   |||||| |||||||||||    
T  36450765 gtgtaggtgtcggacac-gacgcgtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 3e-30; HSPs: 25)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 46 - 169
Target Start/End: Complemental strand, 42005005 - 42004882
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacacgggacacgcctaat 145  Q
    |||||||||||||||||| ||||||| ||||||| || ||||||||||||| |||||||||| |||||||||||| ||||||||||   |||||||||||    
T  42005005 acacggataataatttgagaaaatgacataatttagtgtaatcataggtgttgtgtcggtgtcggacaccgacgcatgtccgacactaaacacgcctaat 42004906  T
Q  146 ccggtaagtgtccgtgcttcatag 169  Q
     ||   ||||||||||||||||||    
T  42004905 tcgaagagtgtccgtgcttcatag 42004882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 6936460 - 6936373
Alignment:
Q  44 caacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac 131  Q
    |||||||||||||||| ||| ||||||| ||||||  || ||||||||||||||||||| |||| |||||||||||| | ||||||||    
T  6936460 caacacggataataatctgagaaaatgacataattaagtgtaatcataggtgtcgtgtctgtgtcggacaccgacgcatatccgacac 6936373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 33 - 169
Target Start/End: Complemental strand, 40747844 - 40747707
Alignment:
Q  33 gacacggacaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac- 131  Q
    ||||| |||||| |||||||||||||||||| ||||||| ||||||   | |||| ||||||||| ||| ||||| |||||||||  | ||||| ||||     
T  40747844 gacacagacaccgacacggataataatttgagaaaatgacataattcaatgtaattataggtgtcatgttggtgtcggacaccgatccatgtcccacaca 40747745  T
Q  132 gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||||| |||||||||   || |||||||||||||||    
T  40747744 gggacacccctaatccgaggagcgtccgtgcttcatag 40747707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 40917802 - 40917879
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||   | ||||||||||||||||    
T  40917802 ggtgtcgtgtcggtgttggaca-cgacacgtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcatag 40917879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 103
Target Start/End: Original strand, 6573981 - 6574047
Alignment:
Q  37 cggacaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcg 103  Q
    |||||||| |||||||| ||||||||| | ||||||||||||| || ||||||||||||| ||||||    
T  6573981 cggacaccgacacggatgataatttgagacaatgatataatttagtgtaatcataggtgttgtgtcg 6574047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 34741916 - 34741965
Alignment:
Q  120 cgtgtccgacacgggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||||||||||||||||||||||   ||||||||||||||||||    
T  34741916 cgtgtccgacacgggacacgcctaatccgaagagtgtccgtgcttcatag 34741965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 18556462 - 18556385
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||||||| ||||||  ||| ||||| ||| |||||||| |||||||||||||||||  |||||||||||||||||||    
T  18556462 ggtgtcgtgacggtgtcagac-ccgacacgtatccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 18556385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 47989550 - 47989627
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||||||||| |||||| ||| | |||| |||| ||||||||||||||||||   ||||||||||||||||||    
T  47989550 ggtgtcgtgtcggtgtcggacac-gacacatgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttcatag 47989627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 51 - 147
Target Start/End: Complemental strand, 351137 - 351040
Alignment:
Q  51 gataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaatcc 147  Q
    ||||||||||||||||||| | ||||||   |  ||||||| || |||||||| |||| ||||||||||| ||| | ||| |||||||||||||||||    
T  351137 gataataatttgataaaatcacataattcaatggaatcatatgtatcgtgtcgctgttagacaccgacgcatgttcaacaccgggacacgcctaatcc 351040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 6427518 - 6427594
Alignment:
Q  93 gtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||||||| || || |||||| ||| |||||||||||| ||||||||||||||| | | ||||||||||||||||||    
T  6427518 gtgtcgtgtaggcgtcggacac-gacacgtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttcatag 6427594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 171
Target Start/End: Original strand, 32899931 - 32900012
Alignment:
Q  91 aggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaatccggtaagtgtccgtgcttcatagat 171  Q
    |||||| |||||||||| |||||||||||| |||| |||| |||||||| |||||||||   | ||||| ||||||||||||    
T  32899931 aggtgttgtgtcggtgtcggacaccgacgcatgtcggacaccgggacacccctaatccgaggattgtccttgcttcatagat 32900012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 32461464 - 32461393
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||| |||||| ||| |||||| ||||| ||||||||||||||||   |||||||||||||||||||    
T  32461464 gtgtcggtgtcggacac-gacacgtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttcatag 32461393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 37598879 - 37598950
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||| |||||| ||| |||||||||||  |||||||||||||||||   ||||||||||||||||||    
T  37598879 gtgtcggtgtcggacac-gacacgtgtccgacaatgggacacgcctaatccgaggagtgtccgtgcttcatag 37598950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 108
Target Start/End: Complemental strand, 39101262 - 39101178
Alignment:
Q  24 atcagatacgacacggacaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgtt 108  Q
    |||||| ||||||| |||||| ||||  |||||||||||| ||||| | ||||||  || |||| ||||||||||| ||||||||    
T  39101262 atcagacacgacacagacaccgacacatataataatttgagaaaataacataattaagtgtaattataggtgtcgtttcggtgtt 39101178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 9828097 - 9828174
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||||||||| ||||  ||||| ||| |||||||||||| |||||||| ||||||||   ||||||||||||||||||    
T  9828097 ggtgtcgtgtccgtgtcagacac-gacacgtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 9828174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 22794138 - 22794080
Alignment:
Q  44 caacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtc 102  Q
    |||||||||||||||||||| ||||||| |||||   || |||| ||||||||||||||    
T  22794138 caacacggataataatttgaaaaaatgacataatacagtgtaattataggtgtcgtgtc 22794080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 42359460 - 42359391
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcat 167  Q
    |||||||||| |||||  |||| ||||||||||| |||||||||||||||||   ||||||||||||||||    
T  42359460 gtgtcggtgtcggacaa-gacgtgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 15765800 - 15765877
Alignment:
Q  93 gtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||| |||||||||  ||  |||||| ||||| ||||| |||||||||||||||||   ||||||||||||||||||    
T  15765800 gtgtcttgtcggtgtcagatgccgacgtgtgtctgacactgggacacgcctaatccgaagagtgtccgtgcttcatag 15765877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 106
Target Start/End: Original strand, 21145467 - 21145528
Alignment:
Q  46 acacggataataatttgataaaa-tgatataattttgtttaatcataggtgtcgtgtcggtg 106  Q
    |||||||||||||||||| |||| ||| ||||||  || |||||||||| ||||||||||||    
T  21145467 acacggataataatttgaaaaaaatgacataattcagtgtaatcataggcgtcgtgtcggtg 21145528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 167
Target Start/End: Complemental strand, 1486760 - 1486646
Alignment:
Q  53 taataatttgataaaatgatataattttgtttaatcataggtgtcg-tgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggt 150  Q
    ||||||||||| ||||| | ||||||  || |||| ||| |||||| ||||| ||| |||||| ||| |||||||||||| |||||||||||||||||      
T  1486760 taataatttgaaaaaatcacataattcagtgtaattataagtgtcggtgtcg-tgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgag 1486663  T
Q  151 aagtgtccgtgcttcat 167  Q
     |||||| |||||||||    
T  1486662 gagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 9690285 - 9690213
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||||| || || ||| ||| |||||||||||| ||||||||||||||||||  |||||  |||||||||||    
T  9690285 gtgtcggcgtcggccactgacacgtgtccgacaccgggacacgcctaatccggagagtgtttgtgcttcatag 9690213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 17831537 - 17831485
Alignment:
Q  95 gtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaatc 146  Q
    |||||||| |||| ||||||||||  |||||||||| ||||||||||||||||    
T  17831537 gtcgtgtcagtgtcggacaccgacatgtgtccgacaccgggacacgcctaatc 17831485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 23440004 - 23440044
Alignment:
Q  39 gacaccaacacggataataatttgataaaatgatataattt 79  Q
    |||||| ||||| |||||||||||| |||||||||||||||    
T  23440004 gacaccgacacgtataataatttgagaaaatgatataattt 23440044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 320
Target Start/End: Complemental strand, 34673875 - 34673835
Alignment:
Q  280 attttttagatcggttcaattactttttaaatcagtttaac 320  Q
    ||||||||||| |||||||| |||||||||||| |||||||    
T  34673875 attttttagattggttcaatcactttttaaatcggtttaac 34673835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 48415784 - 48415728
Alignment:
Q  46 acacggataataatttgataaaa-tgatataattttgtttaatcataggtgtcgtgt 101  Q
    |||||||||||||||| | |||| ||||||||||| || ||||||||| ||||||||    
T  48415784 acacggataataattttaaaaaaatgatataatttagtgtaatcatagatgtcgtgt 48415728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 7e-28; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 46 - 168
Target Start/End: Original strand, 15864834 - 15864950
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacacgggacacgcctaat 145  Q
    |||||||||||||||||| ||||||||||||||| || |||||||||||||||||||      |||||||||| |||||| |||||||||||||||||||    
T  15864834 acacggataataatttgaaaaaatgatataatttagtgtaatcataggtgtcgtgtc------ggacaccgacacgtgtctgacacgggacacgcctaat 15864927  T
Q  146 ccggtaagtgtccgtgcttcata 168  Q
    ||    |||||||||||||||||    
T  15864928 ccaaagagtgtccgtgcttcata 15864950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 27903631 - 27903757
Alignment:
Q  44 caacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacacggga-cacgcct 142  Q
    |||||| ||||||||||||| |||| ||||||||||  | |||||||| |||| |||||||||| ||| ||||||||||||| ||||| ||| || ||||    
T  27903631 caacacagataataatttgagaaaacgatataatttaatgtaatcataagtgttgtgtcggtgtcggataccgacgcgtgtctgacactggatcatgcct 27903730  T
Q  143 aatccggtaagtgtccgtgcttcatag 169  Q
    ||||||  |||||||||||||||||||    
T  27903731 aatccgagaagtgtccgtgcttcatag 27903757  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 146
Target Start/End: Complemental strand, 14223911 - 14223811
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacacgggacacgcctaat 145  Q
    |||| ||||||||||||| |||| |||||||||| || || ||||| |||||||||||||||  ||||||||| ||||||||||| ||||||||||||||    
T  14223911 acacagataataatttgagaaaacgatataatttagtgtattcataagtgtcgtgtcggtgtccgacaccgacacgtgtccgacatgggacacgcctaat 14223812  T
Q  146 c 146  Q
    |    
T  14223811 c 14223811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 44 - 169
Target Start/End: Original strand, 21211287 - 21211413
Alignment:
Q  44 caacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcct 142  Q
    |||||||||||||||||||| ||||| | ||| ||  || |||| || ||||||||||||||||| |||||||||||||||||||||| ||||||| |||    
T  21211287 caacacggataataatttgagaaaattacatagttcagtgtaattatgggtgtcgtgtcggtgttcgacaccgacgcgtgtccgacactgggacactcct 21211386  T
Q  143 aatccggtaagtgtccgtgcttcatag 169  Q
    ||||||   |||||  |||||||||||    
T  21211387 aatccgaggagtgtttgtgcttcatag 21211413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 46 - 169
Target Start/End: Original strand, 25074790 - 25074914
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaa 144  Q
    |||| ||||||||||||| ||||||| ||||||  || |||||||||| || ||||||||||  |||||| ||||||||||||||| ||||||| |||||    
T  25074790 acaccgataataatttgagaaaatgacataattgagtgtaatcataggcgttgtgtcggtgtctgacaccaacgcgtgtccgacactgggacacacctaa 25074889  T
Q  145 tccggtaagtgtccgtgcttcatag 169  Q
    ||||   ||||| ||||||||||||    
T  25074890 tccgaggagtgttcgtgcttcatag 25074914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 44 - 131
Target Start/End: Complemental strand, 12704717 - 12704630
Alignment:
Q  44 caacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac 131  Q
    |||||||||||||||||||| ||||||| ||||||   | |||||||||||||||||||||||| ||||||| |||| ||||||||||    
T  12704717 caacacggataataatttgaaaaaatgacataattcaatgtaatcataggtgtcgtgtcggtgtcggacaccaacgcatgtccgacac 12704630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 43 - 165
Target Start/End: Complemental strand, 25652092 - 25651969
Alignment:
Q  43 ccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcc 141  Q
    ||||||||||||||||||||| ||||||||||||||  || || | |||||||| ||||| ||||||||||||||| ||||| ||||| || ||||| ||    
T  25652092 ccaacacggataataatttgagaaaatgatataattcagtgtagttataggtgttgtgtcagtgttggacaccgacacgtgttcgacaccgagacacacc 25651993  T
Q  142 taatccggtaagtgtccgtgcttc 165  Q
    |||||||   |||||| |||||||    
T  25651992 taatccgaagagtgtcagtgcttc 25651969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 131
Target Start/End: Original strand, 25326421 - 25326512
Alignment:
Q  40 acaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac 131  Q
    |||||||||| ||||||||||| | ||||| ||||||||| || |||| |||| |||||||| ||||| |||||||||||||||| ||||||    
T  25326421 acaccaacacagataataatttaaaaaaataatataatttagtgtaattatagatgtcgtgttggtgtcggacaccgacgcgtgttcgacac 25326512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 169
Target Start/End: Original strand, 8903433 - 8903554
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacacgggacacgcctaat 145  Q
    |||||||||||| ||||| ||||||| ||| ||| || |||| ||||||||||||||| ||  ||||||| | ||||||||||| |||||||| ||||||    
T  8903433 acacggataatattttgagaaaatgacata-tttagtgtaattataggtgtcgtgtcgatgccggacacctatgcgtgtccgac-cgggacacacctaat 8903530  T
Q  146 ccggtaagtgtccgtgcttcatag 169  Q
    |||   ||||| ||||||||||||    
T  8903531 ccgaggagtgttcgtgcttcatag 8903554  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 92 - 169
Target Start/End: Complemental strand, 41961656 - 41961579
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||||||| | |||||| ||| |||||||||||| |||||||||||||||||  |||||||||||||||||||    
T  41961656 ggtgtcgtgtcggtatcggacac-gacacgtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcatag 41961579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 169
Target Start/End: Original strand, 52369780 - 52369906
Alignment:
Q  50 ggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttgg------acaccgacgcgtgtccgaca-cgggacacgcct 142  Q
    |||||||||||||| ||||| | ||||||   | |||||||||||||||||||||||| ||      |||||||||||||||| ||| |||||||| |||    
T  52369780 ggataataatttgagaaaattacataattcaatgtaatcataggtgtcgtgtcggtgtcggtatcggacaccgacgcgtgtccaacaccgggacacacct 52369879  T
Q  143 aatccggtaagtgtccgtgcttcatag 169  Q
    | ||||   ||||||||||||||||||    
T  52369880 attccgaggagtgtccgtgcttcatag 52369906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 52 - 122
Target Start/End: Original strand, 25892467 - 25892537
Alignment:
Q  52 ataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgt 122  Q
    |||||||||| | ||||||||||||||  || ||||||||||||||||||| |||| ||||||| ||||||    
T  25892467 ataataatttaagaaaatgatataattcagtgtaatcataggtgtcgtgtcagtgtcggacaccaacgcgt 25892537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 167
Target Start/End: Complemental strand, 4987297 - 4987222
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcat 167  Q
    |||| |||||||||||||||||| ||| |||||||||||| |||||||||||||||||   ||||||||| ||||||    
T  4987297 ggtgacgtgtcggtgttggacac-gacacgtgtccgacaccgggacacgcctaatccgaggagtgtccgtacttcat 4987222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 172
Target Start/End: Original strand, 20503513 - 20503587
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatagatt 172  Q
    ||||||||||||||||| ||| | |||| ||||| |||||||||||||||||   |||||||||||||||||||||    
T  20503513 gtgtcggtgttggacac-gacacatgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagatt 20503587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 24205099 - 24204983
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaa 144  Q
    |||||||||||||||||| ||||||| |||||   || |||| ||| ||||||||||||      |||| ||||||||||||||| | ||||||||||||    
T  24205099 acacggataataatttgagaaaatgacataatacagtgtaattataagtgtcgtgtcgg------acactgacgcgtgtccgacaccaggacacgcctaa 24205006  T
Q  145 tccggtaagtgtccgtgcttcat 167  Q
    | ||   ||||||||||||||||    
T  24205005 ttcgaggagtgtccgtgcttcat 24204983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 55401123 - 55401194
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacacgg-gacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||| |||||| ||| |||||||||||| | |||||||||||||||   ||||||||||||||||||    
T  55401123 gtgtcggtgtcggacac-gacacgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 51512232 - 51512142
Alignment:
Q  55 ataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaa 144  Q
    ||||||||||||||| | ||||||   |  ||||||| ||||||||||||||| | ||||||| ||||||| |||| | ||||||||||||    
T  51512232 ataatttgataaaatcacataattcaatggaatcatatgtgtcgtgtcggtgtcgaacaccgatgcgtgtctgacaccaggacacgcctaa 51512142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 11610578 - 11610631
Alignment:
Q  120 cgtgtccgaca-cgggacacgcctaatccggtaagtgtccgtgcttcatagatt 172  Q
    ||||||||||| |||||||||||||||| |   |||||||||||||||||||||    
T  11610578 cgtgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatagatt 11610631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 14209167 - 14209243
Alignment:
Q  93 gtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||||||||||||| |||||| ||| ||||| ||||| ||||| || ||||||||   |||||||||||||||||||    
T  14209167 gtgtcgtgtcggtgtcggacac-gacacgtgtacgacatcgggatacacctaatccaagaagtgtccgtgcttcatag 14209243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 104
Target Start/End: Original strand, 25365448 - 25365521
Alignment:
Q  31 acgacacggacaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcgg 104  Q
    ||||||| ||||||  || |||||||||||||| || |||| ||||||  || |||||||| ||||||||||||    
T  25365448 acgacacagacaccggcatggataataatttgagaatatgacataattcggtgtaatcataagtgtcgtgtcgg 25365521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 34185101 - 34185052
Alignment:
Q  121 gtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||||||||| |||||||||||||||||   ||||||||||||||||||    
T  34185101 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 34185052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 14216946 - 14217021
Alignment:
Q  93 gtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcata 168  Q
    |||||||||  |||| |||||| ||| ||||| |||||| ||||||| |||||||||  ||||||||||||||||||    
T  14216946 gtgtcgtgttagtgtcggacac-gacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14217021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Original strand, 14223075 - 14223150
Alignment:
Q  93 gtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcata 168  Q
    |||||||||  |||| |||||| ||| ||||| |||||| ||||||| |||||||||  ||||||||||||||||||    
T  14223075 gtgtcgtgttagtgtcggacac-gacacgtgtacgacactgggacacacctaatccgagaagtgtccgtgcttcata 14223150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 167
Target Start/End: Original strand, 29508452 - 29508567
Alignment:
Q  53 taataatttgataaaatgatataattttgtttaatcataggtgtcg-tgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggt 150  Q
    ||||||||||| ||||| ||||||||  || |||| ||| |||||| ||| ||||| |||||| ||| |  ||||||||| |||||||| |||||||       
T  29508452 taataatttgaaaaaatcatataattcagtgtaattatatgtgtcgatgttggtgtcggacac-gacacacgtccgacaccgggacacgtctaatccaag 29508550  T
Q  151 aagtgtccgtgcttcat 167  Q
    |||||||||||||||||    
T  29508551 aagtgtccgtgcttcat 29508567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 50 - 98
Target Start/End: Original strand, 33006828 - 33006876
Alignment:
Q  50 ggataataatttgataaaatgatataattttgtttaatcataggtgtcg 98  Q
    |||||||||||||||||||| | ||||||  |||||||| |||||||||    
T  33006828 ggataataatttgataaaattacataattcagtttaatcgtaggtgtcg 33006876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Complemental strand, 40993346 - 40993275
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||| |||||| ||| | |||||||||| |||||||||||||||||   ||||||| ||||||||||    
T  40993346 gtgtcggtgtcggacac-gacacatgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcatag 40993275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 46 - 168
Target Start/End: Complemental strand, 23354710 - 23354582
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggt------gttggacaccgacgcgtgtccgacacgggacacg 139  Q
    |||| ||||||||||||| ||||||||||||||| || ||||||||||||||||||||||      || ||||||||||  ||||| |||||||||||||    
T  23354710 acacagataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtcggggtcggacaccgaccggtgtctgacacgggacacg 23354611  T
Q  140 cctaatccggtaagtgtccgtgcttcata 168  Q
    |||||||||   |||||||||| ||||||    
T  23354610 cctaatccgaggagtgtccgtggttcata 23354582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 167
Target Start/End: Complemental strand, 23355053 - 23354926
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgt------tggacaccgacgcgtgtccgacacgggacacg 139  Q
    |||| ||||||||||||| ||||||||||||||| ||  ||||||||||||| |||||||||      ||||||||||| |||||| |||||||||||||    
T  23355053 acacagataataatttgagaaaatgatataatttagtgcaatcataggtgtcatgtcggtgtcggggttggacaccgacccgtgtctgacacgggacacg 23354954  T
Q  140 cctaatccggtaagtgtccgtgcttcat 167  Q
    |||||||||   ||||||| ||||||||    
T  23354953 cctaatccgaggagtgtccttgcttcat 23354926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 107
Target Start/End: Original strand, 25544469 - 25544543
Alignment:
Q  33 gacacggacaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgt 107  Q
    ||||| |||||| ||||| |||||||||||| ||||||||||||||  || ||||||||||||||||||||||||    
T  25544469 gacaccgacaccgacacgtataataatttgagaaaatgatataattcagtgtaatcataggtgtcgtgtcggtgt 25544543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 92 - 174
Target Start/End: Original strand, 37419796 - 37419878
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatagattgt 174  Q
    |||||||||||||||| |||||| || ||||||||||||| |||||||||||||||||   |||||||||||||||||| ||||    
T  37419796 ggtgtcgtgtcggtgtcggacac-gatgcgtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcataggttgt 37419878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 46 - 133
Target Start/End: Original strand, 37986780 - 37986867
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacacgg 133  Q
    |||| ||||||||||||| ||||||||||| ||  || ||||||||||| |||||| ||||| ||||||||||| ||||| |||||||    
T  37986780 acacagataataatttgaaaaaatgatatatttgagtgtaatcataggtatcgtgttggtgtcggacaccgacgagtgtctgacacgg 37986867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 169
Target Start/End: Complemental strand, 11308061 - 11307934
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgt------tggacaccgacgcgtgtccgacacgggacacg 139  Q
    ||||||||| |||||||| ||||||| ||||||  || ||||||||||||||||||||||||      ||||||||||||||||||||||||  || ||     
T  11308061 acacggata-taatttgaaaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtcggtgttggacaccgacgcgtgtccgacac-cgaaaca 11307964  T
Q  140 cctaatccggtaagtgtccgtgcttcatag 169  Q
    | |||||||   ||||||||||||||||||    
T  11307963 cttaatccgaggagtgtccgtgcttcatag 11307934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 131
Target Start/End: Original strand, 24011042 - 24011122
Alignment:
Q  51 gataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac 131  Q
    ||||||||||||| ||||||| ||||||| || ||||||||||||||| ||||||||  || || || |||||||||||||    
T  24011042 gataataatttgagaaaatgacataatttagtgtaatcataggtgtcgcgtcggtgtctgatacggatgcgtgtccgacac 24011122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 171
Target Start/End: Original strand, 26769564 - 26769643
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatagat 171  Q
    |||||| ||||||| | |||||| ||| |||||||||||| |||||||||||||||||   ||||||||||||||||||||    
T  26769564 ggtgtcatgtcggtatcggacac-gacacgtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatagat 26769643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 35056921 - 35056998
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacacgg-gacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||||||||| ||||| |||| ||||||||||||||  |||||||||||| |   ||||||||||||||||||    
T  35056921 ggtgtcgtgtcggtgtcggaca-cgacacgtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttcatag 35056998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 146
Target Start/End: Original strand, 38919212 - 38919313
Alignment:
Q  51 gataataatttgataaaatgatataattttgtttaatcataggtgtc------gtgtcggtgttggacaccgacgcgtgtccgacacgggacacgcctaa 144  Q
    ||||||||||||| |||||| |||| ||| || ||||||||||||||      |||||||||| ||| || || ||||||||||||| ||||||| ||||    
T  38919212 gataataatttgagaaaatgttatagtttagtgtaatcataggtgtcgtgttagtgtcggtgtcggatactgatgcgtgtccgacacaggacacgtctaa 38919311  T
Q  145 tc 146  Q
    ||    
T  38919312 tc 38919313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 162
Target Start/End: Complemental strand, 2846916 - 2846854
Alignment:
Q  102 cggtgttggacaccgacgcgtgtccgaca--cgggacacgcctaatccggtaagtgtccgtgc 162  Q
    ||||||||||||||||||||||||| |||   |||||||||||||||||  |||| |||||||    
T  2846916 cggtgttggacaccgacgcgtgtccaacatcggggacacgcctaatccgagaagtttccgtgc 2846854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 167
Target Start/End: Complemental strand, 2438730 - 2438661
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcat 167  Q
    |||||||||| |||||| ||| | |||||||||| |||||||||||||||||   ||||||||||||||||    
T  2438730 gtgtcggtgtcggacac-gacacatgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 168
Target Start/End: Original strand, 44860373 - 44860449
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaatccggtaagtgtccgtgcttcata 168  Q
    |||||||||| ||||||||||| ||||  |||||||||| |||||||| |||||| ||   |||||||||||||||||    
T  44860373 ggtgtcgtgttggtgttggaca-cgacatgtgtccgacatcgggacacacctaattcgaggagtgtccgtgcttcata 44860449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 106
Target Start/End: Complemental strand, 10535817 - 10535757
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtg 106  Q
    |||| ||||||||||||| ||||||| ||||||  || |||||||| ||||||||| ||||    
T  10535817 acaccgataataatttgagaaaatgacataattcagtgtaatcataagtgtcgtgttggtg 10535757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 46 - 169
Target Start/End: Original strand, 34446566 - 34446690
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaa 144  Q
    |||||||||||||||||| ||||||| ||||||  || ||||||||||||||||||||||||   |||||||||||| || ||||| ||||||| |||||    
T  34446566 acacggataataatttgagaaaatgacataattcagtgtaatcataggtgtcgtgtcggtgtccaacaccgacgcgtatctgacactgggacacacctaa 34446665  T
Q  145 tccggtaagtgtccgtgcttcatag 169  Q
    |||    ||||||||||||||||||    
T  34446666 tccaaggagtgtccgtgcttcatag 34446690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 108
Target Start/End: Original strand, 6389744 - 6389806
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgtt 108  Q
    |||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||    
T  6389744 acacggataataatttgagaaaatgatataatttagtgtaatcataggtgtcgtgtcggtgtt 6389806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 17168524 - 17168442
Alignment:
Q  43 ccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtc 125  Q
    ||||||| ||||||||||||| ||||||||||||||| || |||| ||||||||||||||||||| |||||| ||| ||||||    
T  17168524 ccaacactgataataatttgagaaaatgatataatttagtgtaataataggtgtcgtgtcggtgtcggacactgacacgtgtc 17168442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 171
Target Start/End: Original strand, 26247429 - 26247552
Alignment:
Q  48 acggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgacacgggacacgcctaatcc 147  Q
    |||||||||||||| | ||||||| ||| ||| || ||||||||||| |||||||||||| ||||||| || |||||| ||||| | |||| |||||||     
T  26247429 acggataataatttaagaaaatgacatattttagtataatcataggtttcgtgtcggtgtcggacaccaacacgtgtctgacaccgaacacacctaatct 26247528  T
Q  148 ggtaagtgtccgtgcttcatagat 171  Q
    |   |||||||||| |||||||||    
T  26247529 gaggagtgtccgtgtttcatagat 26247552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 19602276 - 19602178
Alignment:
Q  11 cacagacatggacatcagatacgacacggacac--caacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgt 107  Q
    |||||||||||||| | || || ||||||||||  |||||| ||||||||||||| ||||||||||||||  || ||||||||||| | ||||||||||    
T  19602276 cacagacatggacaccggacacaacacggacacaccaacactgataataatttgagaaaatgatataattcagtgtaatcataggtattgtgtcggtgt 19602178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 104
Target Start/End: Complemental strand, 12086403 - 12086345
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcgg 104  Q
    |||||||||||||||||| | ||||| ||||||  ||||||||||||||||||||||||    
T  12086403 acacggataataatttgagataatgacataattcagtttaatcataggtgtcgtgtcgg 12086345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 166
Target Start/End: Complemental strand, 12235577 - 12235462
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaa 144  Q
    ||||||||||||||| || ||||||| ||||||  || |||||||||||||||||||       |||||||||| ||||||| || |||||||| |||||    
T  12235577 acacggataataattagagaaaatgacataattcagtgtaatcataggtgtcgtgtc------cgacaccgacgtgtgtccggcaccgggacacccctaa 12235484  T
Q  145 tccggtaagtgtccgtgcttca 166  Q
    |||   ||||||||||||||||    
T  12235483 tccaaaaagtgtccgtgcttca 12235462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 92 - 175
Target Start/End: Complemental strand, 8365525 - 8365442
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatagattgtt 175  Q
    |||||||||||||| | |||||| ||| |||||||||||| |||||||||||||||||   ||| |||||||||||||| |||||    
T  8365525 ggtgtcgtgtcggtatcggacac-gacacgtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcataggttgtt 8365442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 4877991 - 4878061
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacacgggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||| |||||| ||| | |||||||||| ||||||||||||||||   ||||||||||||||||||    
T  4877991 gtgtcggtgtcggacac-gacacatgtccgacacaggacacgcctaatccgaggagtgtccgtgcttcatag 4878061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 169
Target Start/End: Original strand, 16766750 - 16766827
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||||||||| ||||||  || |||||||||||| |||||||||||||||||   | ||||||||||||||||    
T  16766750 ggtgtcgtgtcggtgtcggacaca-acacgtgtccgacaccgggacacgcctaatccgaagaatgtccgtgcttcatag 16766827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 6389806 - 6389851
Alignment:
Q  124 tccgacacgggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||||||||||||| |||||||||  |||||||||||||||||||    
T  6389806 tccgacacgggacactcctaatccgagaagtgtccgtgcttcatag 6389851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 122 - 174
Target Start/End: Complemental strand, 12868664 - 12868611
Alignment:
Q  122 tgtccgacacggga-cacgcctaatccggtaagtgtccgtgcttcatagattgt 174  Q
    |||||||||||||| ||||||||||||| |||||||| ||||||||||| ||||    
T  12868664 tgtccgacacgggaacacgcctaatccgataagtgtcggtgcttcataggttgt 12868611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 96
Target Start/End: Complemental strand, 7569244 - 7569176
Alignment:
Q  28 gatacgacacggacaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgt 96  Q
    ||||||||| |||||||||||| ||||||||||||| ||||| | ||||||  || |||| ||||||||    
T  7569244 gatacgacatggacaccaacacagataataatttgagaaaattacataattcagtgtaattataggtgt 7569176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 9107376 - 9107297
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatagat 171  Q
    |||||||||||||||| ||||||  ||| ||||||||||| ||||||| |||||||||   |||| |||||||||||||||    
T  9107376 ggtgtcgtgtcggtgtcggacaca-acgtgtgtccgacaccgggacacacctaatccgaggagtgcccgtgcttcatagat 9107297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 28648353 - 28648405
Alignment:
Q  120 cgtgtccgacacgggacacgcctaatccggtaagtgtccgtgcttcatagatt 172  Q
    ||||||| ||||||||||||||||||||| | ||||||| |||| ||||||||    
T  28648353 cgtgtcctacacgggacacgcctaatccgatgagtgtccttgctccatagatt 28648405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 173
Target Start/End: Original strand, 34595182 - 34595257
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatagattg 173  Q
    |||||||||| |||||| ||| |||||| ||||| ||||||| |||||||||   ||||||||||||||||||||||    
T  34595182 gtgtcggtgtcggacac-gacacgtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcatagattg 34595257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 7625123 - 7625170
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcatagg 93  Q
    |||||||||||||||||| ||||||||||||||| || |||| |||||    
T  7625123 acacggataataatttgagaaaatgatataatttagtataattatagg 7625170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 166
Target Start/End: Complemental strand, 9025495 - 9025448
Alignment:
Q  120 cgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttca 166  Q
    |||||||||||| |||||||||||||||||  ||||||||||||||||    
T  9025495 cgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 9025448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 21 - 107
Target Start/End: Complemental strand, 30781377 - 30781291
Alignment:
Q  21 gacatcagatacgacacggacaccaacacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgt 107  Q
    |||| |||| |||||||| ||||  |||||  ||||||||||| ||||||| ||||||   | |||||||||||||| |||||||||    
T  30781377 gacaccagacacgacacgaacactgacacgtgtaataatttgagaaaatgacataattaattgtaatcataggtgtcatgtcggtgt 30781291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 278 - 311
Target Start/End: Original strand, 4889131 - 4889164
Alignment:
Q  278 acattttttagatcggttcaattactttttaaat 311  Q
    ||||||||||||||||||||| ||||||||||||    
T  4889131 acattttttagatcggttcaactactttttaaat 4889164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 169
Target Start/End: Complemental strand, 10339126 - 10339054
Alignment:
Q  97 cgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||||||||| |||||| ||| | |||||||||| ||||||||||||||| |   ||||||||||||||||||    
T  10339126 cgtgtcggtgtcggacac-gacacatgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcatag 10339054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 53 - 167
Target Start/End: Complemental strand, 26178732 - 26178620
Alignment:
Q  53 taataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggtgttggacaccgacgcgtgtccgaca-cgggacacgcctaatccggta 151  Q
    ||||||||||||||||| | ||||||| || |||||||| |||||| ||  |||||||||| ||| | ||||  |||| |||||||||||||||| |       
T  26178732 taataatttgataaaatcacataatttagtgtaatcatatgtgtcg-gt--gtgttggacatcgatgtgtgtttgacaccgggacacgcctaatcggagg 26178636  T
Q  152 agtgtccgtgcttcat 167  Q
    |||||| |||||||||    
T  26178635 agtgtctgtgcttcat 26178620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 28152146 - 28152217
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||| |||||| ||| |||||||||||| |||||| ||||||||||   ||||| ||||||||||||    
T  28152146 gtgtcggtgtcggacac-gacacgtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatag 28152217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 169
Target Start/End: Original strand, 28715343 - 28715414
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    |||||||||| |||||| ||| ||||| |||||| |||||||||||||| ||  |||||| ||||||||||||    
T  28715343 gtgtcggtgtcggacac-gacacgtgttcgacaccgggacacgcctaattcgagaagtgtacgtgcttcatag 28715414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 92 - 172
Target Start/End: Original strand, 241647 - 241727
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatagatt 172  Q
    |||||||||| ||||| |||||| ||| |||||||||||| |||||||||||||||||  ||||||||||||||||||||||    
T  241647 ggtgtcgtgttggtgtcggacac-gacacgtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatagatt 241727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0057 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 24078 - 24155
Alignment:
Q  93 gtgtcgtgtcggtgttggacaccg-acgcgtgtccgacacgggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||||||||||||| ||||||   ||| ||||||||||| |||||||||||||||| | ||||||||||||||||||    
T  24078 gtgtcgtgtcggtgtcggacacaacacgtgtgtccgacactggacacgcctaatccgatgagtgtccgtgcttcatag 24155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 473 - 403
Alignment:
Q  98 gtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcata 168  Q
    |||||||||| |||||| |||||||||||||||| ||||||| |||||||||   |||||||||||||||||    
T  473 gtgtcggtgtcggacac-gacgcgtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

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Target: scaffold0199 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 46 - 104
Target Start/End: Original strand, 1950 - 2008
Alignment:
Q  46 acacggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcgg 104  Q
    |||||||||||||||||  ||||||| ||| ||| || |||||||||||||||||||||    
T  1950 acacggataataatttgtgaaaatgacatattttagtgtaatcataggtgtcgtgtcgg 2008  T

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Target: scaffold0793 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 122 - 172
Target Start/End: Complemental strand, 4869 - 4818
Alignment:
Q  122 tgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatagatt 172  Q
    |||||||||| |||||||||||||||||   |||||||||||||||||||||    
T  4869 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatagatt 4818  T

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Target: scaffold0598 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0598
Description:

Target: scaffold0598; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 105
Target Start/End: Complemental strand, 8109 - 8052
Alignment:
Q  48 acggataataatttgataaaatgatataattttgtttaatcataggtgtcgtgtcggt 105  Q
    |||||||||||||||| ||||||| ||||||  || ||| ||||||| ||||||||||    
T  8109 acggataataatttgagaaaatgacataattcagtgtaaacataggtatcgtgtcggt 8052  T

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Target: scaffold0450 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 172
Target Start/End: Complemental strand, 8641 - 8561
Alignment:
Q  92 ggtgtcgtgtcggtgttggacaccgacgcgtgtccgacacggg-acacgcctaatccggtaagtgtccgtgcttcatagatt 172  Q
    |||||||||||||| | |||||| ||  |||||||||||| || ||||||||||| ||   |||||||||||||||||||||    
T  8641 ggtgtcgtgtcggtatcggacac-gatacgtgtccgacactggtacacgcctaattcgaggagtgtccgtgcttcatagatt 8561  T

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Target: scaffold0019 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 169
Target Start/End: Original strand, 71779 - 71855
Alignment:
Q  93 gtgtcgtgtcggtgttggacaccgacgcgtgtccgacac-gggacacgcctaatccggtaagtgtccgtgcttcatag 169  Q
    ||||||||||||||| ||||||  || |||||||||||| |||||||| ||||||||   |||||| |||||||||||    
T  71779 gtgtcgtgtcggtgtcggacaca-acacgtgtccgacaccgggacacgactaatccgaggagtgtcggtgcttcatag 71855  T

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