View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_high_22 (Length: 369)
Name: NF19488_high_22
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_high_22 |
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Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 5673027 - 5673315
Alignment:
| Q |
1 |
aattatttacatcaagtattctccatgatcgacgtagtccgcatcggcctggtggaaaattaaaggtgtatctactactacgactttggtccttctcaat |
100 |
Q |
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| T |
5673027 |
aattatttatatcaaatattctccatgatcgacctagcccgcatcggcctggtggaaaattaaaggtgtatctactactacgactttggtccttctcaat |
5673126 |
T |
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| Q |
101 |
gggtgtctagcatatgaatttaatttggagagggggaccgagactaggtgatcctctatctacttttcttttttaatcgtcgtagaagcgttaaatttga |
200 |
Q |
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| T |
5673127 |
gggtgtctaacatatgaatttaatttggagagggggaccgagactaggtgatcctctatctacttttcttttttaatcgttgtagaagggttaaatttga |
5673226 |
T |
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| Q |
201 |
tgatgaattttactgtagaggtgaggttatttaaaggctatgaagtgggttttacaacgagtgttcatatttcacatttacaatttggt |
289 |
Q |
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| T |
5673227 |
tgatgaatgttactttagaggtgaggttatttaaaggctatgaaatgggttttacaacaagtgttcatatttcacatttacaatttggt |
5673315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 5698079 - 5698367
Alignment:
| Q |
1 |
aattatttacatcaagtattctccatgatcgacgtagtccgcatcggcctggtggaaaattaaaggtgtatctactactacgactttggtccttctcaat |
100 |
Q |
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| T |
5698079 |
aattatttatatcaaatattctccatgatcgacctagcccgcatcggcctggtggaaaattaaaggtgtatctactactacgactttggtccttctcaat |
5698178 |
T |
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| Q |
101 |
gggtgtctagcatatgaatttaatttggagagggggaccgagactaggtgatcctctatctacttttcttttttaatcgtcgtagaagcgttaaatttga |
200 |
Q |
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| T |
5698179 |
gggtgtctaacatatgaatttaatttggagagggggaccgagactaggtgatcctctatctacttttcttttttaatcgttgtagaagggttaaatttga |
5698278 |
T |
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| Q |
201 |
tgatgaattttactgtagaggtgaggttatttaaaggctatgaagtgggttttacaacgagtgttcatatttcacatttacaatttggt |
289 |
Q |
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| T |
5698279 |
tgatgaatgttactttagaggtgaggttatttaaaggctatgaaatgggttttacaacaagtgttcatatttcacatttacaatttggt |
5698367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 288 - 351
Target Start/End: Original strand, 5673784 - 5673847
Alignment:
| Q |
288 |
gtgggatactcaatgtttagaaaaggagaacaaaggactgggagttcataaaattcgtgaattt |
351 |
Q |
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| T |
5673784 |
gtgggatactcaatgtttagaaaaggagaacaaaggactgggagttcataaaattcgggaattt |
5673847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 288 - 351
Target Start/End: Original strand, 5698836 - 5698899
Alignment:
| Q |
288 |
gtgggatactcaatgtttagaaaaggagaacaaaggactgggagttcataaaattcgtgaattt |
351 |
Q |
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| T |
5698836 |
gtgggatactcaatgtttagaaaaggagaacaaaggactgggagttcataaaattcgggaattt |
5698899 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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