View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_high_23 (Length: 368)
Name: NF19488_high_23
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 350
Target Start/End: Complemental strand, 38564581 - 38564232
Alignment:
| Q |
1 |
acagaggaggtgatagtggtttacgtgcatgtctcattacccttttcttatgccaggatatatcgagaaattaaaattgagtaaatgaaaatgcaaagat |
100 |
Q |
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| T |
38564581 |
acagaggaggggatagtggtttacgtgcaagtctcattacccttttcttatgccaggatatatcgagaaattaaaattgagtaaatgaaaatgcaaagat |
38564482 |
T |
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| Q |
101 |
taatacttcatttgtttataaacatgtgcgaacgttcataatctcaatatatatctgactgatcaggaatttgaatgagacaaatgcagaggatgttgct |
200 |
Q |
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| T |
38564481 |
taatacttcatttgtttataaacatgtgcgaacgttcataatctcaatatatatctgactgatcaggaatttgaatgagacaaatgcagaggatgttgct |
38564382 |
T |
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| Q |
201 |
taacgcatttgccatataccactcgttcattagggacccttgtgaccggtgtgattgggtgcacgtgatgctaatgcatacataaaccaaattcaccttt |
300 |
Q |
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| T |
38564381 |
taacgcatttgccatataccactcgttcattagggacccttgtgaccggtgtgattgggtgcacgtgatgctaatgcatacataaaccaaattcaccttt |
38564282 |
T |
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| Q |
301 |
gagttgagtatgatctaagctatatttgcttgtttaacttggatatattt |
350 |
Q |
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| T |
38564281 |
gagttgagtatgatctaagctatatttgcttgtttaacttggatatattt |
38564232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 34692131 - 34692224
Alignment:
| Q |
180 |
acaaatgcagaggatgttgcttaacgcatttgccatataccactcgt--tcattagggacccttgtgaccggtgtgattgggtgcacgtgatgc |
271 |
Q |
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| T |
34692131 |
acaaatgcagaggatgttgcttaaagcatttgccaaatgccacttgttctcgttagggaccctcgtgactggtgtgagcatgtgcacgtgatgc |
34692224 |
T |
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