View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_high_25 (Length: 347)
Name: NF19488_high_25
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 16 - 329
Target Start/End: Complemental strand, 11953270 - 11952966
Alignment:
| Q |
16 |
atagaatgcaaagttatacgggagcgtacatagaacaattgaaaagaacgtaaatataacaacaaagaaccgaagtacaaaaacttggaattaattacca |
115 |
Q |
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| T |
11953270 |
atagaatgcaaagttatacgggagcgtacatagaacaattgaaaagaacgtaaacataac----------cgaagtacaaagacttggaattaattacca |
11953181 |
T |
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| Q |
116 |
tcttggatacagatatagaaaaa-gaagctacatgcgaagaagactaaccgcgtggcagtgcgcagttggaactgatgcgtctgagactaaacagcacag |
214 |
Q |
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| T |
11953180 |
tcttggatacaaaaatagaaaaaagaaactacatgcgaagaagactaaccgcgtggcaatgcgcaggtggaactgatgcgtctgggactaaacggcacag |
11953081 |
T |
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| Q |
215 |
cgcggaggaaggacagcgactctgagtgatatgcgcagaaacgacagagtagagaatagattagggttccatgctggtagaggaaacaggaaacaatttt |
314 |
Q |
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| T |
11953080 |
cacggaggaaggacagcgactctgagtgatatgcgcagaaaggacagagtagagaatggattagggttccatgctggtagaggaaacaggaaacaatttt |
11952981 |
T |
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| Q |
315 |
acgactagggttcag |
329 |
Q |
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| T |
11952980 |
acgactagggttcag |
11952966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 16 - 271
Target Start/End: Complemental strand, 11979000 - 11978746
Alignment:
| Q |
16 |
atagaatgcaaagttatacgggagcgtacatagaacaattgaaaagaacgtaaatataacaacaaagaaccgaagtacaaaaacttggaattaattacca |
115 |
Q |
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||||||||||| |||| |||||| ||||| || ||||||||||||||||| ||| |||||||||||||||| ||||||| | |||| ||||||||||||| |
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| T |
11979000 |
atagaatgcaa-gttacacgggaacgtacttataacaattgaaaagaacgcaaacataacaacaaagaacctaagtacagagacttagaattaattacca |
11978902 |
T |
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| Q |
116 |
tctt-ggatacagatatagaaaaagaagctacatgcgaagaagactaaccgcgtggcagtgcgcagttggaactgatgcgtctgagactaaacagcacag |
214 |
Q |
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| T |
11978901 |
tcttgggaaacaaatatataaaaagaagctagatgtgaagaagactaaccgtgtgacggtgcgcagaaggaactg-tgtctgagagactaaaccgcacag |
11978803 |
T |
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| Q |
215 |
cgcggaggaaggacagcgactctgagtgatatgcgcagaaacgacagagtagagaat |
271 |
Q |
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| T |
11978802 |
cgttgcagaacgatggcggttctgagtgatatacggaggaacgacagagaagagaat |
11978746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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