View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19488_high_29 (Length: 343)

Name: NF19488_high_29
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19488_high_29
NF19488_high_29
[»] chr1 (1 HSPs)
chr1 (1-328)||(24273953-24274277)
[»] chr3 (9 HSPs)
chr3 (3-322)||(13417382-13417701)
chr3 (145-319)||(30047642-30047818)
chr3 (1-218)||(28706309-28706524)
chr3 (123-325)||(27367518-27367707)
chr3 (232-325)||(18726266-18726359)
chr3 (247-325)||(28706521-28706599)
chr3 (242-325)||(27338649-27338732)
chr3 (123-185)||(18726188-18726250)
chr3 (3-55)||(30047522-30047574)
[»] chr4 (2 HSPs)
chr4 (83-322)||(53471070-53471311)
chr4 (74-218)||(9008945-9009089)
[»] scaffold0043 (1 HSPs)
scaffold0043 (210-325)||(79390-79507)


Alignment Details
Target: chr1 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 24273953 - 24274277
Alignment:
Q  1 tttgagtcttttggacaagaaggggtttagttttaaaaatgaaggtggagctatacatatttttctacaattatcaagtgtaattttgaaaggtgtgaag 100  Q
    |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||| | |   ||  ||||||| ||| ||||||||||||||    
T  24273953 tttgagtcttctggacaagaaggggtttagttttaaaagtgaaggtggagctatacatatttt-caagggtt--caagtgtgattctgaaaggtgtgaag 24274049  T
Q  101 caaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatgacgaagttgtggcata 200  Q
    ||  ||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24274050 cagagtactttgtactttttacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatgacgaagttgtggcata 24274149  T
Q  201 tgaggcttgggcatatgagtgagatgggtgcaaattctggctaaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtg 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||    
T  24274150 tgaggcttgggcatatgagtgagatgggtgcaaattctggctaaagatgatattctttgtgggcataagataaaagatcttgggttccgtgaacactgtg 24274249  T
Q  301 tttttgggtaactacatcgcaacaaatt 328  Q
    ||||||||||||||||||||||||||||    
T  24274250 tttttgggtaactacatcgcaacaaatt 24274277  T

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Target: chr3 (Bit Score: 130; Significance: 3e-67; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 3 - 322
Target Start/End: Complemental strand, 13417701 - 13417382
Alignment:
Q  3 tgagtcttttggacaagaaggggtttagttttaaaaatgaaggtggagctatacatatttttctacaattatcaagtgtaattttgaaaggtgtgaagca 102  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||   || | || |||  |    | ||||  || ||||||||||||||||| |     
T  13417701 tgagtcttttggacaagaaggggtttagtttcaaaagtgaaggtggagagttatacatgtttgcaagggt-tcaaccgtgattttgaaaggtgtgaaacg 13417603  T
Q  103 aggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatgacgaagttgtggcatatg 202  Q
    | ||||| | ||||||||||||||||||||  |||||| |   ||||||||||||||||| |||||||||||  |||||||||||| |||||||||||||    
T  13417602 atgtactctctactttctacaaggtactacactatctgcttaagttgttgttgcttcctccgagattgaccataaagatatgacgaggttgtggcatatg 13417503  T
Q  203 aggcttgggcatatgagtgaga-tggg-tgcaaattctggctaaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtg 300  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||| || ||||||||| ||| ||  | || |||||||||||||||||||||||||    
T  13417502 aggcttgggcatatgagtgagagtgggatgcaaattctggctaaagataatcttctttgtgagcaaaatct-aaggatcttgggttctgtgaacactgtg 13417404  T
Q  301 tttttgggtaactacatcgcaa 322  Q
    |||||||| |||||||||||||    
T  13417403 tttttgggaaactacatcgcaa 13417382  T

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Target: chr3; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 145 - 319
Target Start/End: Original strand, 30047642 - 30047818
Alignment:
Q  145 tgttgttgttgcttcctctgagattgaccaagaagatatgacgaagttgtggcatatgaggcttgggcatatgagtgagatggg--tgcaaattctggct 242  Q
    |||||||||||||||||| ||||||||| ||||||| |||| |||||||||||||||||||||||| ||||||||||||  |||  |||||||||| |||    
T  30047642 tgttgttgttgcttcctccgagattgactaagaagaaatgaagaagttgtggcatatgaggcttggacatatgagtgagtaggggatgcaaattctagct 30047741  T
Q  243 aaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtgtttttgggtaactacatcg 319  Q
    ||||||||| || ||||||||||||| ||||| |||||||||||||||||| |||||||||||||| ||||||||||    
T  30047742 aaagatgatcttatttgtgggcacaaaataaatgatcttgggttctgtgaaaactgtgtttttgggaaactacatcg 30047818  T

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Target: chr3; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 28706309 - 28706524
Alignment:
Q  1 tttgagtcttttggacaagaaggggtttagttttaaaaatgaaggtggagctatacatatttttctacaattatcaagtgtaattttgaaa-ggtgtgaa 99  Q
    ||||||||||||||||||||||||||||||||| |||  ||||| ||||| ||||||| |||  | |   ||  ||||||| |||  |||| ||||||||    
T  28706309 tttgagtcttttggacaagaaggggtttagtttcaaaggtgaagctggagttatacatgtttg-caagggtt--caagtgtgattcagaaaaggtgtgaa 28706405  T
Q  100 gcaaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatgacgaagttgtggcat 199  Q
    ||  |||||| | ||||||||||||||||| ||  || |||||  || || ||||||||||||  |||||||||||||||||||||||||||||||||||    
T  28706406 gcggggtactctatactttctacaaggtacgacactaactgattctgctgctgttgcttcctccaagattgaccaagaagatatgacgaagttgtggcat 28706505  T
Q  200 atgaggcttgggcatatga 218  Q
    | |||||||| ||||||||    
T  28706506 aagaggcttgcgcatatga 28706524  T

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Target: chr3; HSP #4
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 123 - 325
Target Start/End: Complemental strand, 27367707 - 27367518
Alignment:
Q  123 aaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatgacgaagttgtggcatatgaggcttgggcatatgagtga 222  Q
    ||||||||| | ||||||||  |||||||||||||||||| || |||||||||||||||||||| || |||||||||||||| |   ||       ||||    
T  27367707 aaggtactatgctatctgattctgttgttgttgcttcctccgaaattgaccaagaagatatgacaaaattgtggcatatgagtcagagg-------gtga 27367615  T
Q  223 gatgggtgcaaattctggctaaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtgtttttgggtaactacatcgcaa 322  Q
          || ||||| ||| ||||||||||  ||||||||||||||||||||| ||| |||||||||||||||| |||| ||||| | ||||  |||||||    
T  27367614 ------tgaaaattttggataaagatgatcctctttgtgggcacaagataaaggattttgggttctgtgaacattgtgattttgagaaactttatcgcaa 27367521  T

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Target: chr3; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 232 - 325
Target Start/End: Original strand, 18726266 - 18726359
Alignment:
Q  232 aaattctggctaaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtgtttttgggtaactacatcgcaacaa 325  Q
    ||||| ||| |||||||||| |||||||||||||||||||||| ||| |||||||||||||||| |||| ||||| | ||||  ||||||||||    
T  18726266 aaattttggataaagatgatcttctttgtgggcacaagataaaggattttgggttctgtgaacattgtgattttgagaaactttatcgcaacaa 18726359  T

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Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 247 - 325
Target Start/End: Original strand, 28706521 - 28706599
Alignment:
Q  247 atgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtgtttttgggtaactacatcgcaacaa 325  Q
    |||||||||||| |||||| ||||| || ||||||| ||| ||| |||||||||||| |||| ||||||||||||||||    
T  28706521 atgatattctttatgggcataagatgaaggatcttgagttttgtaaacactgtgtttctgggaaactacatcgcaacaa 28706599  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 27338732 - 27338649
Alignment:
Q  242 taaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtgtttttgggtaactacatcgcaacaa 325  Q
    |||| ||||| ||||||||| |||||||||||| ||| |||||||||||||||| |||  ||||| | ||||  ||||||||||    
T  27338732 taaacatgatcttctttgtgagcacaagataaaggattttgggttctgtgaacattgtaattttgagaaactttatcgcaacaa 27338649  T

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Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 123 - 185
Target Start/End: Original strand, 18726188 - 18726250
Alignment:
Q  123 aaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagatatga 185  Q
    ||||||||| | ||||||||  |||||||||||||||||| || |||| ||||||||||||||    
T  18726188 aaggtactatgctatctgattatgttgttgttgcttcctccgaaattggccaagaagatatga 18726250  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 30047522 - 30047574
Alignment:
Q  3 tgagtcttttggacaagaaggggtttagttttaaaaatgaaggtggagctata 55  Q
    |||||||||||||||||||| |||||||||| |||  ||||||||||| ||||    
T  30047522 tgagtcttttggacaagaagaggtttagtttcaaaggtgaaggtggagttata 30047574  T

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Target: chr4 (Bit Score: 123; Significance: 4e-63; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 83 - 322
Target Start/End: Complemental strand, 53471311 - 53471070
Alignment:
Q  83 attttgaaaggtgtgaagcaaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgaccaagaagata 182  Q
    ||||||||||||||||||   |||||| | ||||||||||||||||||||| || |||||  || ||||||||||||||  |||||||||||||||||||    
T  53471311 attttgaaaggtgtgaagaggggtactctgtactttctacaaggtactacgctaactgattatggtgttgttgcttccttcgagattgaccaagaagata 53471212  T
Q  183 tgacgaagttgtggcatatgaggcttgggcatatgagtgagatggg--tgcaaattctggctaaagatgatattctttgtgggcacaagataaaagatct 280  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||  |||||||||| ||||||||| || |||||| ||| ||||||||||| ||||     
T  53471211 tgacgaaattgtggcatatgaggcttgggcatatgagtgagagggggatgcaaattcttgctaaagataatcttctttatggacacaagataaaggatcc 53471112  T
Q  281 tgggttctgtgaacactgtgtttttgggtaactacatcgcaa 322  Q
    |||||| | |||||||| || ||||||| ||| |||||||||    
T  53471111 tgggttatctgaacactatgcttttgggaaacgacatcgcaa 53471070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 74 - 218
Target Start/End: Complemental strand, 9009089 - 9008945
Alignment:
Q  74 tcaagtgtaattttgaaaggtgtgaagcaaggtactttttactttctacaaggtactacgttatctgatattgttgttgttgcttcctctgagattgacc 173  Q
    |||||||| ||| | ||||||| ||||| ||||||| |||| ||||||||||||| |||  ||||||||  ||||| |||| ||||||  || ||||||     
T  9009089 tcaagtgtgattctaaaaggtgagaagcgaggtactctttaatttctacaaggtattacactatctgattatgttgctgtttcttccttcgatattgact 9008990  T
Q  174 aagaagatatgacgaagttgtggcatatgaggcttgggcatatga 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  9008989 aagaagatatgacgaagttgtggcatatgaggcttgggcatatga 9008945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 210 - 325
Target Start/End: Original strand, 79390 - 79507
Alignment:
Q  210 ggcatatgagtgagatggg--tgcaaattctggctaaagatgatattctttgtgggcacaagataaaagatcttgggttctgtgaacactgtgtttttgg 307  Q
    ||||||||||| ||| |||  || ||||| ||| ||||| |||| |||||||||||||||||||||| ||| || |||||| |||||| |||| |||||     
T  79390 ggcatatgagtcagagggggatgaaaattttggataaaggtgatcttctttgtgggcacaagataaaggattttaggttctctgaacattgtgattttga 79489  T
Q  308 gtaactacatcgcaacaa 325  Q
    | ||||  ||||||||||    
T  79490 gaaactttatcgcaacaa 79507  T

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