View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_high_31 (Length: 319)
Name: NF19488_high_31
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 226
Target Start/End: Complemental strand, 1738829 - 1738616
Alignment:
| Q |
13 |
aaaatattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatccttggc |
112 |
Q |
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| T |
1738829 |
aaaatattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatccttgcc |
1738730 |
T |
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| Q |
113 |
aatgttagttggtctatatatttcatgaaacactcattcattgatatatatacacacacactacttatgcataataattaaactacagtaatagttaaca |
212 |
Q |
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| T |
1738729 |
aatgttagttggtctatatatttcatgaaacactcattcattgatatatatacacacacactacttatgcataataattaaactacagtaatagtttact |
1738630 |
T |
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| Q |
213 |
ttattgatagtttt |
226 |
Q |
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|||||||||||||| |
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| T |
1738629 |
ttattgatagtttt |
1738616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 115
Target Start/End: Complemental strand, 1717332 - 1717232
Alignment:
| Q |
13 |
aaaatattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatccttggc |
112 |
Q |
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|||||||||||| |||||||||||| |||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||||| | |
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| T |
1717332 |
aaaatattgactacataagaaatgatagagcctgggatcttagtggtgtctcttcatcaaatgctcttagttttgtaggtaaa--taccaaatccttgcc |
1717235 |
T |
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| Q |
113 |
aat |
115 |
Q |
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||| |
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| T |
1717234 |
aat |
1717232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 1738591 - 1738546
Alignment:
| Q |
257 |
tgaggatatctaaatgattttacttttctattttggtaggggaatg |
302 |
Q |
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| T |
1738591 |
tgaggatatctaaatgattttacttttctattttggtaggggaatg |
1738546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 302
Target Start/End: Complemental strand, 1717185 - 1717140
Alignment:
| Q |
257 |
tgaggatatctaaatgattttacttttctattttggtaggggaatg |
302 |
Q |
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|||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
1717185 |
tgaggatatctaaatgtttttacttttctatttgggtaggggaatg |
1717140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 1748684 - 1748591
Alignment:
| Q |
13 |
aaaatattgacttcataagaaatgacagagccggggatcttagtggtttctcttcttcaaatgctcttagttttgtaggtaaaataaccaaatcct |
108 |
Q |
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||||||| ||||||||||||||||| ||||| |||||| |||| | ||||| |||||||||||| |||| |||||||| ||||||||||| |
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| T |
1748684 |
aaaatatcgacttcataagaaatgaaagagcatcagatcttgctggtgtatcttcaacaaatgctcttacttttataggtaaa--aaccaaatcct |
1748591 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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