View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_high_36 (Length: 286)
Name: NF19488_high_36
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 6421302 - 6421031
Alignment:
| Q |
1 |
ctatcgttggttggtatgttatgtagggacacaagaaatcatataatatttatgtcgagtgaatttaggatgtttttatggattcaaattttaaaacata |
100 |
Q |
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| T |
6421302 |
ctatcgttggttggtatgttatgtagggacacaagaaatcatatagtatttatgtcgagtgaatttaggatgtttttatggattcaaattttaaaacata |
6421203 |
T |
|
| Q |
101 |
ttttgtttttcctgtaagtttcacaatttgagcttaaattctcgatgtttgatcttgattggataatctagatatttgtgattgcgtgcagatcatgttt |
200 |
Q |
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| T |
6421202 |
ttttgtttttctt-taagtttcacaatttgagcttgaaatctcgatgtttgatcttgattggataatctagatacttgtgaccgcatgcaaatcatgttt |
6421104 |
T |
|
| Q |
201 |
tcaaactatatagacaaagactaatcctttaaaatatatgattcacgataaagactaatccttcaaaatatat |
273 |
Q |
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|||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6421103 |
tcaaactatatagataaagactaatcctttaaaatatatggttcacgataaagactaatccttcaaaatatat |
6421031 |
T |
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