View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19488_high_40 (Length: 256)
Name: NF19488_high_40
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_high_40 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 29963195 - 29962968
Alignment:
| Q |
18 |
cacttagaagtttcaaagtgcacagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttcgaaccataaaaaatgagctgaga |
117 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29963195 |
cactaagaagtttcaaagtgcaaagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttggaaccataaaaaatgagctgaga |
29963096 |
T |
|
| Q |
118 |
tgcttgagtctttggccgacttgcaaaattgatgtcatgagttttgaggaatgattctgctgcttttgaagatgaaataacaattgttggaacttgacct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
29963095 |
tgcttgagtctttggccgacttgcaaaattgatgtcatgagttttgaggaatgattctgcagcttttgaagatgaaataacaattgttggaacttgacca |
29962996 |
T |
|
| Q |
218 |
agttgtaaggacatgattgaaccatatt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
29962995 |
agttgtaaggacatgattgaaccatatt |
29962968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 30011603 - 30011830
Alignment:
| Q |
18 |
cacttagaagtttcaaagtgcacagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttcgaaccataaaaaatgagctgaga |
117 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
30011603 |
cactaagaagtttcaaagtgcaaagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttggaaccataaaaaatgagctgaga |
30011702 |
T |
|
| Q |
118 |
tgcttgagtctttggccgacttgcaaaattgatgtcatgagttttgaggaatgattctgctgcttttgaagatgaaataacaattgttggaacttgacct |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30011703 |
tgcttgagtctttggccgacttgcaaaattgatgtcatgagttttgaggaatgattctgcagcttttgaagatgaaataacaattgttggaacttgacca |
30011802 |
T |
|
| Q |
218 |
agttgtaaggacatgattgaaccatatt |
245 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
30011803 |
agttgtaaggacatgattgaaccatatt |
30011830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 25 - 245
Target Start/End: Complemental strand, 30005935 - 30005715
Alignment:
| Q |
25 |
aagtttcaaagtgcacagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttcgaaccataaaaaatgagctgagatgcttga |
124 |
Q |
| |
|
||||||||||||||| | |||| | ||||||||||||||||||||||||||||||||||||| |||||| ||||||||| | ||||| | ||| ||||| |
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|
| T |
30005935 |
aagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcagaaaaagccatccctttggaaccataagacatgagatctgatccttga |
30005836 |
T |
|
| Q |
125 |
gtctttggccgacttgcaaaattgatgtcatgagttttgaggaatgattctgctgcttttgaagatgaaataacaattgttggaacttgacctagttgta |
224 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| | ||| |||||||||||||| ||||||| |
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|
| T |
30005835 |
acctttggtcgacttgcaaaaacgatgtcatgagttttgaggaatgattctgcagcttttgaagatgaaatgataatagttggaacttgaccaagttgta |
30005736 |
T |
|
| Q |
225 |
aggacatgattgaaccatatt |
245 |
Q |
| |
|
|||||||||||| |||||||| |
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|
| T |
30005735 |
aggacatgattggaccatatt |
30005715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 30045212 - 30045439
Alignment:
| Q |
18 |
cacttagaagtttcaaagtgcacagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttcgaaccataaaaaatgagctgaga |
117 |
Q |
| |
|
|||| ||||||||||||||||| | |||| | ||||||||||||||||||||||||||| ||||||||| |||||| ||||||||| | ||||||| ||| |
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|
| T |
30045212 |
cactaagaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatactcacaaaaagccatccctttggaaccataagacatgagctcaga |
30045311 |
T |
|
| Q |
118 |
tgcttgagtctttggccgacttgcaaaattgatgtcatgagttttgaggaatgattctgctgcttttgaagatgaaataacaattgttggaacttgacct |
217 |
Q |
| |
|
| ||||| ||||||| || ||||| ||| |||||| || |||||||||||||||||||||||||||||||||||||| ||||| | ||| |||||||| |
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|
| T |
30045312 |
tccttgaatctttggtcggcttgcgaaaacgatgtcgtgggttttgaggaatgattctgctgcttttgaagatgaaatgacaatagctgggacttgacca |
30045411 |
T |
|
| Q |
218 |
agttgtaaggacatgattgaaccatatt |
245 |
Q |
| |
|
||||||||||||||||||| |||||||| |
|
|
| T |
30045412 |
agttgtaaggacatgattggaccatatt |
30045439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 18 - 244
Target Start/End: Complemental strand, 29999504 - 29999278
Alignment:
| Q |
18 |
cacttagaagtttcaaagtgcacagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttcgaaccataaaaaatgagctgaga |
117 |
Q |
| |
|
|||| ||||||||||||||||| | |||| | | ||| |||||||||||||||||||||||||||| ||||||||| |||||||| | ||||||| || |
|
|
| T |
29999504 |
cactaagaagtttcaaagtgcaaaatttcctcatactgcgccaataaggaccatactcagaaaaaggcaaccctttagaaccataggacatgagctctga |
29999405 |
T |
|
| Q |
118 |
tgcttgagtctttggccgacttgcaaaattgatgtcatgagttttgaggaatgattctgctgcttttgaagatgaaataacaattgttggaacttgacct |
217 |
Q |
| |
|
| ||||| |||| || || ||||| ||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29999404 |
tccttgaatcttcggtcggcttgcgaaaacgatgtcatgggttttgaggaatgattctgctccttttgaagatgaaataacaattgttggaacttgacca |
29999305 |
T |
|
| Q |
218 |
agttgtaaggacatgattgaaccatat |
244 |
Q |
| |
|
||||||||||||||||||| ||||||| |
|
|
| T |
29999304 |
agttgtaaggacatgattggaccatat |
29999278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 245
Target Start/End: Original strand, 30071042 - 30071269
Alignment:
| Q |
18 |
cacttagaagtttcaaagtgcacagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttcgaaccataaaaaatgagctgaga |
117 |
Q |
| |
|
|||| ||||||||||||||||| | |||| | ||||||||||||||||||||||| ||||||||| | | |||||| |||||||| || ||||||| ||| |
|
|
| T |
30071042 |
cactaagaagtttcaaagtgcaaaatttcctcacactacgccaataaggaccatagtcagaaaaaactatccctttggaaccatataacatgagctcaga |
30071141 |
T |
|
| Q |
118 |
tgcttgagtctttggccgacttgcaaaattgatgtcatgagttttgaggaatgattctgctgcttttgaagatgaaataacaattgttggaacttgacct |
217 |
Q |
| |
|
| ||||| ||||||| || ||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||||||| | ||| |||||||||||||| |
|
|
| T |
30071142 |
tccttgactctttggtcggcttgcaaaaacgatgtcatgggttttgagaaatgattctgcagcttttgaagatgaaatgataatagttggaacttgacca |
30071241 |
T |
|
| Q |
218 |
agttgtaaggacatgattgaaccatatt |
245 |
Q |
| |
|
||||||||||||||||||| |||||||| |
|
|
| T |
30071242 |
agttgtaaggacatgattggaccatatt |
30071269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 18 - 245
Target Start/End: Complemental strand, 29990800 - 29990573
Alignment:
| Q |
18 |
cacttagaagtttcaaagtgcacagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttcgaaccataaaaaatgagctgaga |
117 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||| | |||| |||||| ||||||||||| |||||||| | |||| || | |
|
|
| T |
29990800 |
cactaagaagtttcaaagtgcagagtttctttacactacgccaataagggtcgtacttagaaaacgccaaccctttgcaaccataagatatgatctctgc |
29990701 |
T |
|
| Q |
118 |
tgct-tgagtctttggccgacttgcaaaattgatgtcatgagttttgaggaatgattctgctgcttttgaagatgaaataacaattgttggaacttgacc |
216 |
Q |
| |
|
| || | ||| || || || |||| ||| ||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
29990700 |
tcctataagt-ttcggtcggtttgcgaaaacgatgtcatgggttttgaggaatgattctgctgcttttgaagatgaaatgacaattgttggaacttgtcc |
29990602 |
T |
|
| Q |
217 |
tagttgtaaggacatgattgaaccatatt |
245 |
Q |
| |
|
|||||||| ||||| |||| |||||||| |
|
|
| T |
29990601 |
aagttgtaaagacataattggaccatatt |
29990573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 120 - 245
Target Start/End: Complemental strand, 29949535 - 29949410
Alignment:
| Q |
120 |
cttgagtctttggccgacttgcaaaattgatgtcatgagttttgaggaatgattctgctgcttttgaagatgaaataacaattgttggaacttgacctag |
219 |
Q |
| |
|
||||| |||||||||| |||||||| |||||||| ||||||||||||||||||||||| ||||||||||| ||||| | |||||||||||||||||| || |
|
|
| T |
29949535 |
cttgaatctttggccggcttgcaaatttgatgtcgtgagttttgaggaatgattctgcagcttttgaagaagaaattataattgttggaacttgaccaag |
29949436 |
T |
|
| Q |
220 |
ttgtaaggacatgattgaaccatatt |
245 |
Q |
| |
|
||||||||||||||||| |||||||| |
|
|
| T |
29949435 |
ttgtaaggacatgattggaccatatt |
29949410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 148 - 245
Target Start/End: Complemental strand, 29943839 - 29943742
Alignment:
| Q |
148 |
gatgtcatgagttttgaggaatgattctgctgcttttgaagatgaaataacaattgttggaacttgacctagttgtaaggacatgattgaaccatatt |
245 |
Q |
| |
|
||||||||| ||||||| |||||| ||||| ||||||||||||||||| ||||| | ||| |||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29943839 |
gatgtcatgggttttgacgaatgactctgcggcttttgaagatgaaatgacaatagctgggacttgacctagttgtaaggacatgattggaccatatt |
29943742 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 18 - 102
Target Start/End: Complemental strand, 29952090 - 29952006
Alignment:
| Q |
18 |
cacttagaagtttcaaagtgcacagtttctttacactacgccaataaggaccatactcagaaaaagccaaccctttcgaaccata |
102 |
Q |
| |
|
|||| |||||||| |||||||| |||||| | ||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
|
|
| T |
29952090 |
cactaagaagttttaaagtgcaaagtttcctcacactacgccaataaggaccatacttagaaaaagccaaccctttggaaccata |
29952006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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