View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19488_high_44 (Length: 239)
Name: NF19488_high_44
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_high_44 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 50785398 - 50785619
Alignment:
| Q |
1 |
agaagttgagttacttgcaccagtattgtttccaaagcttttgagaagcgaagtcgcagtagtgccatttccattacttgaagttgcacccatttgagca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50785398 |
agaagttgagttacttgcaccagtattgtttccaaagcttttgagaagcgaagtcgcagtagtgccatttccattacttgaagttgcacccatttgagca |
50785497 |
T |
|
| Q |
101 |
gctttctgaagaagtgcagttgctgacattgatgatatagcagtaccagcagcagcattaatgttactgtttcctccttgggagaaaacattgctgaaga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50785498 |
gctttctgaagaagtgcagttgctgacattgatgatatagcagtaccagcagcagcattaatgttactgtttcctccttgggagaaaacattgctgaaga |
50785597 |
T |
|
| Q |
201 |
gtgatggagcactacttgttcc |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
50785598 |
gtgatggagcactacttgttcc |
50785619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 77 - 129
Target Start/End: Complemental strand, 12777621 - 12777569
Alignment:
| Q |
77 |
cttgaagttgcacccatttgagcagctttctgaagaagtgcagttgctgacat |
129 |
Q |
| |
|
|||||||||||||||||||||| |||||| ||||| | |||||||||||||| |
|
|
| T |
12777621 |
cttgaagttgcacccatttgagaagctttttgaagcaaagcagttgctgacat |
12777569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 83 - 131
Target Start/End: Complemental strand, 40750202 - 40750154
Alignment:
| Q |
83 |
gttgcacccatttgagcagctttctgaagaagtgcagttgctgacattg |
131 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
40750202 |
gttgaacctatttgagctgctttctgaagaagtgcagtagctgacattg |
40750154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University