View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19488_high_48 (Length: 228)
Name: NF19488_high_48
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_high_48 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 211
Target Start/End: Original strand, 50712434 - 50712631
Alignment:
| Q |
14 |
gaatatgaaactgaatttttgtcaccagcaagtacatttcctgaaactttaccttcagcaccctgtgatatagggacctctagaccctcatcttttacgc |
113 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50712434 |
gaatatgaaagtgaatttttgtcaccagcaagtacatttcctgaaactttaccttcagcaccttgtgatatagggacctctagaccctcatcttttacgc |
50712533 |
T |
|
| Q |
114 |
ctttgtttcctaacttatttctaagcattgatatgcgatttgtaaactcttcaacagttattgggtatggtaacacctttaattttcgacgttcatat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50712534 |
ctttgtttcctaacttatttctaagcattgatatgcgatttgtaaactcttcaacagttattgggtatggtaacacctttaattttcgacgttcatat |
50712631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University