View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_low_10 (Length: 488)
Name: NF19488_low_10
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 15 - 344
Target Start/End: Complemental strand, 39804100 - 39803779
Alignment:
| Q |
15 |
tattaatccaataaggtgtagtcaaatgtaatcatgtaaaccacaattgcatctaaacttctaaagacatgaagtggtcaatccgtcaatgcactgcact |
114 |
Q |
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| T |
39804100 |
tattaatccaataaggtgcagtcatatgtcatcatgtaaaccacaattgcatctaaacttctaaagacatgaagtggtc-------caatgcaatgcact |
39804008 |
T |
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| Q |
115 |
ttatatatgttccaataa-tgcatgcagtagattcaaacc-atgcgtcacaatttcacttttatttaaagaatgtttcacaatttcacattgtaaatccc |
212 |
Q |
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| T |
39804007 |
ttatatatgttccaataaatgcatgcagtagattcaaacccatgggtcacaatttcacttttatttaaagaatgtttcacaatttcacattgtaaatccc |
39803908 |
T |
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| Q |
213 |
acaatttgtttttt-atcttactttgtagttttaaattggtcacttaattttaaagggatataattcgtcgatgatattttattttcattttatattatg |
311 |
Q |
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| T |
39803907 |
acaatttgttttttgatcttactttgtagttttaaattggtcacttaattttaaagggttataatccgtcgatgatattttattttcattttatattatg |
39803808 |
T |
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| Q |
312 |
aatgttacgtacactaatgtcgttatttttctt |
344 |
Q |
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| T |
39803807 |
aatgt----tacactaatgtcgttatttttctt |
39803779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 431 - 474
Target Start/End: Complemental strand, 39803693 - 39803650
Alignment:
| Q |
431 |
gagattgcatatgcctaaacaagagcaggattgtttttatattt |
474 |
Q |
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| T |
39803693 |
gagattgcatatgcctaaataagagcaggattgtttttatattt |
39803650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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