View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19488_low_11 (Length: 481)
Name: NF19488_low_11
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19488_low_11 |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 462
Target Start/End: Original strand, 12799691 - 12800156
Alignment:
| Q |
1 |
atctcgcatgtcgaagaatatcatgtacgagacaaagacgattttccacaattattaaccctataaactgtcagttggactcaaacgaaaaattcaactt |
100 |
Q |
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| T |
12799691 |
atctcacaagtcgaatagtatcatgtacaagacaaagacgatttcccacaactattaatcctacaaactgttagttggactcgaacggaaaattcaactt |
12799790 |
T |
|
| Q |
101 |
ttataaattatagaacctaatatattttaatggtgaaattatccacttaatactcaaatatttttcacatcaagaagatttaaatcctattatattaaac |
200 |
Q |
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| T |
12799791 |
ttataaattatagaacctaatatattttaatggtgaaattatccacttaatactcaaatatttttcacatcaagaagatttaaatcctattatattaaac |
12799890 |
T |
|
| Q |
201 |
taaaagaaaacaaaactatgtccaacaatttgttaactcactcaaccactaaaactaaccttaaatagaagccaaagaaatcacc------ttctcattc |
294 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
12799891 |
taaaagaaaacaaaactatgtccaacaatttgttaactcactcaaccactaaaactaaccttaaatagaagccaaagaaatcaccttctcattctcattc |
12799990 |
T |
|
| Q |
295 |
tcatttcccatttctcacacttctcatttctcaaattccacaccatacccttcacttccactcctcaaaaaatgagaaaaaccataaccattgtttcatc |
394 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12799991 |
tcatttcccatttct--cacttctcatttctcaaattccactccatacccttcacttccactcctcaaaaaatgagaaaaaccataaccattgtttcatc |
12800088 |
T |
|
| Q |
395 |
atttgcaattcacattatcctccttgcttccatacctttcacatcatctcaatccaacgatttaatag |
462 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
12800089 |
atttgcaattcacattatcctccttgcttccatacctttcacatcatcccaatccaacgatttaatag |
12800156 |
T |
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