View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19488_low_16 (Length: 448)

Name: NF19488_low_16
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19488_low_16
NF19488_low_16
[»] chr6 (10 HSPs)
chr6 (1-429)||(32093498-32093927)
chr6 (13-161)||(32107670-32107817)
chr6 (244-339)||(32107968-32108063)
chr6 (244-339)||(32077664-32077759)
chr6 (1-105)||(32077515-32077619)
chr6 (335-429)||(8997396-8997490)
chr6 (287-333)||(32122605-32122651)
chr6 (364-429)||(9006608-9006673)
chr6 (80-171)||(32122402-32122492)
chr6 (376-429)||(17945708-17945761)
[»] chr2 (1 HSPs)
chr2 (335-429)||(24991603-24991697)
[»] scaffold0500 (1 HSPs)
scaffold0500 (335-429)||(6403-6497)
[»] scaffold0096 (1 HSPs)
scaffold0096 (335-429)||(51565-51659)
[»] scaffold0028 (1 HSPs)
scaffold0028 (335-429)||(84372-84466)
[»] chr7 (1 HSPs)
chr7 (335-429)||(609282-609376)
[»] chr5 (1 HSPs)
chr5 (335-429)||(725840-725934)
[»] chr4 (1 HSPs)
chr4 (335-429)||(114698-114792)
[»] chr3 (1 HSPs)
chr3 (335-429)||(19687347-19687441)


Alignment Details
Target: chr6 (Bit Score: 299; Significance: 1e-168; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 429
Target Start/End: Original strand, 32093498 - 32093927
Alignment:
Q  1 aagaaaatattttttatggaactcacctcctcttagatattgacaatgtaactcaaagccttttagacctgcaggaatgaatacatgacacaaaatctat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  32093498 aagaaaatattttttatggaactcacctcctcttagatattgacaatgtaactcaaagccttttagacctgcaggaataaatacatgacacaaaatctat 32093597  T
Q  101 aagaaatggatttcacacacatacatatttacaaagggaaaacaaatataaa----aatgtatttaccaactttggaattttcattaagagtaacaagaa 196  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||||| |||||    
T  32093598 aaggaatggatttcacacacatacatatttacaaagggaaaacaaatataaaaattaatgtatttaccaactttggaattttcattaagagtaataagaa 32093697  T
Q  197 ggaaacttttacnnnnnnnnactcaatttttaaaatnnnnnnnnnnntccaaattttattttgttgaccaactttaattatattttatagattctaaata 296  Q
    ||||||||||||        ||||||||||| |||            |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32093698 ggaaacttttacttttttttactcaattttttaaa---aaaaaaaaatccaaattttattttgttgaccaactttaattatattttatagattctaaata 32093794  T
Q  297 aatcatttgtaaagttaaaaaggtaaataaattaagtgaaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaaga 396  Q
    ||||||||||||| ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  32093795 aatcatttgtaaacttaaaaaggtaaataaattaagtgaaaatataggtacccaaggtattaaaaatttctagtgcaaaaatgtctcataatagtcaaga 32093894  T
Q  397 aaaggcccctgtacttagatagtggatgctcaa 429  Q
    |||| |||  |||||| || |||||||||||||    
T  32093895 aaagaccctagtacttggacagtggatgctcaa 32093927  T

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Target: chr6; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 32107670 - 32107817
Alignment:
Q  13 tttatggaactcacctcctcttagatattgacaatgtaactcaaagccttttagacctgcaggaatgaatacatgacacaaaatctataagaaatggatt 112  Q
    |||||||||||||||||||||||||| || |||||| |||| ||| | |||||||||||||||| ||||||||||||||||||| ||||||||||||| |    
T  32107670 tttatggaactcacctcctcttagattttcacaatgcaacttaaa-ctttttagacctgcaggactgaatacatgacacaaaatgtataagaaatggaat 32107768  T
Q  113 tcacacacatacatatttacaaagggaaaacaaatataaaaatgtattt 161  Q
    ||||||||||| ||||||||| || ||||||||||||||||||||||||    
T  32107769 tcacacacatatatatttacatagagaaaacaaatataaaaatgtattt 32107817  T

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Target: chr6; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 32107968 - 32108063
Alignment:
Q  244 tccaaattttattttgttgaccaactttaattatattttatagattctaaataaatcatttgtaaagttaaaaaggtaaataaattaagtgaaaat 339  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32107968 tccaaattttattttgttgaccaactttaattatattatatagattcaaaataaatcatttgtaaagttaaaagggtaaataaattaagtgaaaat 32108063  T

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Target: chr6; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 244 - 339
Target Start/End: Original strand, 32077664 - 32077759
Alignment:
Q  244 tccaaattttattttgttgaccaactttaattatattttatagattctaaataaatcatttgtaaagttaaaaaggtaaataaattaagtgaaaat 339  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||    
T  32077664 tccaaattttattttgttgaccaactttaattatattctatagattcaaaacaaatcatttgtaaagttaaaaaggtaaataaattaagtgcaaat 32077759  T

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Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 32077515 - 32077619
Alignment:
Q  1 aagaaaatattt-tttatggaactcacctcctcttagatattgacaatgtaactcaaagccttttagacctgcaggaatgaatacatgacacaaaatcta 99  Q
    |||||||||||  |||||||||||||||||||||||||| || ||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||    
T  32077515 aagaaaatattaatttatggaactcacctcctcttagattttcacaatgtaacttaaa-ccttttagacctgcaggaatgaatacatgacacaaaatgta 32077613  T
Q  100 taagaa 105  Q
    ||||||    
T  32077614 taagaa 32077619  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 8997396 - 8997490
Alignment:
Q  335 aaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaa 429  Q
    |||||||||| |||||| | ||||  || ||||||||||  |||||||||||| ||||||||||| ||||  |||||| || |||||||||||||    
T  8997396 aaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctggtacttggacagtggatgctcaa 8997490  T

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Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 287 - 333
Target Start/End: Original strand, 32122605 - 32122651
Alignment:
Q  287 attctaaataaatcatttgtaaagttaaaaaggtaaataaattaagt 333  Q
    |||| |||||||||||||  |||||||||||||||||||||||||||    
T  32122605 attcaaaataaatcattttgaaagttaaaaaggtaaataaattaagt 32122651  T

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Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 429
Target Start/End: Original strand, 9006608 - 9006673
Alignment:
Q  364 ttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaa 429  Q
    ||||||||||  |||||||||||| ||||||||||| ||||  |||||| || |||||||||||||    
T  9006608 ttctactgcaggaatgtctcataacagtcaagaaaaagccctggtacttggacagtggatgctcaa 9006673  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 171
Target Start/End: Original strand, 32122402 - 32122492
Alignment:
Q  80 aatacatgacacaaaatctataagaaatggatttcacacacatacatatttacaaagggaaaacaaatataaaaatgtatttaccaactttg 171  Q
    ||||||||| | |||||||||  |||||||| ||||| ||||| |||||||||   ||||||| | ||| ||| ||||||||||||||||||    
T  32122402 aatacatgaaataaaatctatttgaaatggaattcac-cacatccatatttacggtgggaaaaaagatagaaacatgtatttaccaactttg 32122492  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 376 - 429
Target Start/End: Original strand, 17945708 - 17945761
Alignment:
Q  376 aatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaa 429  Q
    |||||||||| ||||||||||||||||||  |||||| || | |||||||||||    
T  17945708 aatgtctcatgatagtcaagaaaaggccctagtacttggacattggatgctcaa 17945761  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 24991603 - 24991697
Alignment:
Q  335 aaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaa 429  Q
    |||||||||| |||||| ||||||  |||||||||||||  |||||||||||| ||||||||||| ||||  |||||| || |||||||||||||    
T  24991603 aaaatatgggtacccaatgtattactaatttctactgcaggaatgtctcataacagtcaagaaaaagccctggtacttggacagtggatgctcaa 24991697  T

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Target: scaffold0500 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0500
Description:

Target: scaffold0500; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 6403 - 6497
Alignment:
Q  335 aaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaa 429  Q
    |||||||||| |||||||||||||  || ||||||||||  |||||||||||| | ||||||||| ||||  ||||||  | |||||||||||||    
T  6403 aaaatatgggtacccaaggtattactaacttctactgcaggaatgtctcataacaatcaagaaaaagccctggtacttgaacagtggatgctcaa 6497  T

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Target: scaffold0096 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 51565 - 51659
Alignment:
Q  335 aaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaa 429  Q
    |||||||||| |||||| | ||||  || ||||||||||  |||||||||||| ||||||||||| ||||  |||||| || |||||||||||||    
T  51565 aaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctggtacttggacagtggatgctcaa 51659  T

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Target: scaffold0028 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 84372 - 84466
Alignment:
Q  335 aaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaa 429  Q
    |||||||||| |||||| | ||||  || ||||||||||  |||||||||||| ||||||||||| ||||  |||||| || |||||||||||||    
T  84372 aaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctggtacttggacagtggatgctcaa 84466  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 609282 - 609376
Alignment:
Q  335 aaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaa 429  Q
    |||||||||| |||||| | ||||  || ||||||||||  |||||||||||| ||||||||||| ||||  |||||| || |||||||||||||    
T  609282 aaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctggtacttggacagtggatgctcaa 609376  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 429
Target Start/End: Complemental strand, 725934 - 725840
Alignment:
Q  335 aaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaa 429  Q
    |||||||||| |||||| | ||||  || ||||||||||  |||||||||||| ||||||||||| ||||  |||||| || |||||||||||||    
T  725934 aaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctggtacttggacagtggatgctcaa 725840  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 114698 - 114792
Alignment:
Q  335 aaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaa 429  Q
    |||||||||| |||||| | ||||  || ||||||||||  |||||||||||| ||||||||||| ||||  |||||| || |||||||||||||    
T  114698 aaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctggtacttggacagtggatgctcaa 114792  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 335 - 429
Target Start/End: Original strand, 19687347 - 19687441
Alignment:
Q  335 aaaatatgggcacccaaggtattaaaaatttctactgcaaaaatgtctcataatagtcaagaaaaggcccctgtacttagatagtggatgctcaa 429  Q
    |||||||||| |||||| | ||||  || ||||||||||  |||||||||||| ||||||||||| ||||  |||||| || |||||||||||||    
T  19687347 aaaatatgggtacccaaagcattactaacttctactgcaggaatgtctcataacagtcaagaaaaagccctggtacttggacagtggatgctcaa 19687441  T

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