View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19488_low_19 (Length: 404)

Name: NF19488_low_19
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19488_low_19
NF19488_low_19
[»] chr1 (1 HSPs)
chr1 (16-404)||(23523466-23523854)


Alignment Details
Target: chr1 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Complemental strand, 23523854 - 23523466
Alignment:
Q  16 atgactgaaaatagaagtgtgaaattctttcatatttcacactatgattttttcttataatagaaaaataaatggaatatatagcaactctttgagttta 115  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  23523854 atgattgaaaatagaagtgtgaaattctttcatatttcacactatgattttttcttataatagaaaaataaatggaatatataacaactctttgagttta 23523755  T
Q  116 gaaacaatgtttcatttcatggtgtgaaaaaataattagaaggatcattgaaacaaattctaaaaggaaggtgcaagtataataaaattaatacctggtg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23523754 gaaacaatgtttcatttcatggtgtgaaaaaataattagaaggatcattgaaacaaattctaaaaggaaggtgcaagtataataaaattaatacctggtg 23523655  T
Q  216 tcaatggattccgactcataatataaaaagaatcagaaacaattagttccaacatacgtaactaaaaggaagaaatttctcatattattttatatatatt 315  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23523654 tcaatggattccgacttataatataaaaagaatcagaaacaattagttccaacatacgtaactaaaaggaagaaatttctcatattattttatatatatt 23523555  T
Q  316 acgcccaagctgctcaaagtagcttagttgaatcaatcataagaagttattttgctgagtgacactaatactatatcatgtatgaaaaa 404  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23523554 acgcccaagctgctcaaagtagcttagttgaatcaatcataagaagttattttgctgagtgacactaatactatatcatgtatgaaaaa 23523466  T

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