View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19488_low_2 (Length: 596)

Name: NF19488_low_2
Description: NF19488
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19488_low_2
NF19488_low_2
[»] chr3 (2 HSPs)
chr3 (141-581)||(30740333-30740761)
chr3 (14-82)||(33896074-33896142)
[»] chr8 (5 HSPs)
chr8 (14-113)||(9413189-9413287)
chr8 (106-175)||(25731922-25731994)
chr8 (106-164)||(22930917-22930978)
chr8 (142-174)||(11161074-11161106)
chr8 (106-157)||(13784228-13784277)
[»] scaffold0444 (1 HSPs)
scaffold0444 (106-170)||(1481-1543)
[»] chr5 (3 HSPs)
chr5 (106-170)||(10493379-10493446)
chr5 (52-111)||(13164621-13164680)
chr5 (106-170)||(27195428-27195495)
[»] chr4 (8 HSPs)
chr4 (106-170)||(44377615-44377677)
chr4 (88-170)||(38791072-38791152)
chr4 (123-172)||(46945265-46945312)
chr4 (106-173)||(50711509-50711574)
chr4 (106-170)||(16743187-16743249)
chr4 (141-170)||(21436307-21436336)
chr4 (141-170)||(53369062-53369091)
chr4 (129-176)||(19850126-19850176)
[»] chr1 (3 HSPs)
chr1 (108-164)||(44595835-44595894)
chr1 (109-175)||(40160357-40160421)
chr1 (141-174)||(37441929-37441962)
[»] chr7 (4 HSPs)
chr7 (106-164)||(36471820-36471876)
chr7 (106-173)||(26719156-26719226)
chr7 (141-172)||(37333695-37333726)
chr7 (129-170)||(7443829-7443873)
[»] scaffold0746 (1 HSPs)
scaffold0746 (108-175)||(5356-5426)
[»] chr2 (2 HSPs)
chr2 (129-170)||(33830890-33830934)
chr2 (106-162)||(40675183-40675237)
[»] scaffold0043 (1 HSPs)
scaffold0043 (123-170)||(16492-16542)


Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 141 - 581
Target Start/End: Complemental strand, 30740761 - 30740333
Alignment:
Q  141 tcggttcgactcgactcatttccaaccctacttgggttgggtatgattcactcatcctagttatctcccagactctcttggaccatgattccatagatca 240  Q
    |||||||||||||||||||||||| ||||||||||||     ||||||||||  |||||||||||||  |||||||||||||||||||||||||||||||    
T  30740761 tcggttcgactcgactcatttccagccctacttgggt-----atgattcactggtcctagttatctcagagactctcttggaccatgattccatagatca 30740667  T
Q  241 tccttctcgnnnnnnnggttggaacaaaattcaggcattttggttagagcctttgacagttgccctagggaatccaacaccttcgtcaataggtgacatt 340  Q
    || ||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30740666 tctttctcgtttt---ggttggaacaaaattcaggcattttggttagagcctttgacagttgccctagggaatccaacaccttcgtcaataggtgaaatt 30740570  T
Q  341 tagttcgcgatcagctattttcttagtttgagaagctctactctcagagagcgaccaccggtaagaaagcctactaacaagttagactttccaatccaag 440  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  30740569 tagttcgcgatcagctattttcttagtttgagaagctctactctcagagagcgaccactggtaagaaagcctactaacaagttagactttccaatccaat 30740470  T
Q  441 gtagtatttcc---aaacccaatacatgtagccgagcagctgctgatgctagtcgaggttgtgtcgattagggcaaagtgcaagtgtccaacgtgatgga 537  Q
    ||||| || ||   |   ||||       | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30740469 gtagtcttcccgttatttccaa-------acccaagcagctgctgatgctagtcgaggttgtgtcgattagggcaaagtgcaagtgtccaacgtgatgga 30740377  T
Q  538 tgaagatgaaaaaagatgaaattcctcttcttcataggagatat 581  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  30740376 tgaagatgaaaaaagatgaaattcctcttcttcataggagatat 30740333  T

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Target: chr3; HSP #2
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 33896142 - 33896074
Alignment:
Q  14 attattctctctttttattttattttaaaatgaccttagaattatttgaattgagctaatgaacctatc 82  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33896142 attattctctctttttattttattttaaaatgaccttagaattatttgaattgagctaatgaacctatc 33896074  T

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Target: chr8 (Bit Score: 68; Significance: 4e-30; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 14 - 113
Target Start/End: Original strand, 9413189 - 9413287
Alignment:
Q  14 attattctctctttttattttattttaaaatgaccttagaattatttgaattgagctaatgaacctatcgagccgttcgtgaagtttaaacaagccgaac 113  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||| ||||||  ||||||||    
T  9413189 attattctctctttttatttt-ttttaaaatgaccttagaattatttcaattgagttaatgaacctatcgcgccgttcgtgaactttaaatgagccgaac 9413287  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 106 - 175
Target Start/End: Original strand, 25731922 - 25731994
Alignment:
Q  106 agccgaaccatttcttattgagtcgagctcagaca---tcggttcgactcgactcatttccaaccctacttgg 175  Q
    |||||||||| ||||||| ||||||||||||||||   |||||||||||||||||||||||||| ||| ||||    
T  25731922 agccgaaccaattcttatcgagtcgagctcagacaaattcggttcgactcgactcatttccaacactagttgg 25731994  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 106 - 164
Target Start/End: Original strand, 22930917 - 22930978
Alignment:
Q  106 agccgaaccatttcttattgagtcgagctcagaca---tcggttcgactcgactcatttcca 164  Q
    |||||||||| ||||||| |||||||| |||||||   ||||||||||||||||||||||||    
T  22930917 agccgaaccaattcttatcgagtcgagttcagacaggttcggttcgactcgactcatttcca 22930978  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 174
Target Start/End: Complemental strand, 11161106 - 11161074
Alignment:
Q  142 cggttcgactcgactcatttccaaccctacttg 174  Q
    |||||||||||||||||||| ||||||||||||    
T  11161106 cggttcgactcgactcatttgcaaccctacttg 11161074  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 13784277 - 13784228
Alignment:
Q  106 agccgaaccatttcttattgagtcgagctcagacatcggttcgactcgactc 157  Q
    |||||||||| || |||| ||||||||||||||||  |||||||||||||||    
T  13784277 agccgaaccaatttttatcgagtcgagctcagaca--ggttcgactcgactc 13784228  T

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Target: scaffold0444 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0444
Description:

Target: scaffold0444; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 1481 - 1543
Alignment:
Q  106 agccgaaccatttcttattgagtcgagctcagacatcggttcgactcgactcatttccaacccta 170  Q
    |||||||||| ||||||| ||||||||||||||||  |||||||||||||||||||||| |||||    
T  1481 agccgaaccaattcttatcgagtcgagctcagaca--ggttcgactcgactcatttccagcccta 1543  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 10493446 - 10493379
Alignment:
Q  106 agccgaaccatttcttattgagtcgagctcagaca---tcggttcgactcgactcatttccaacccta 170  Q
    |||||||||||||||||| ||||||||||||||||   ||| |||||||||||||||||||| |||||    
T  10493446 agccgaaccatttcttatcgagtcgagctcagacaggttcgattcgactcgactcatttccagcccta 10493379  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 52 - 111
Target Start/End: Original strand, 13164621 - 13164680
Alignment:
Q  52 gaattatttgaattgagctaatgaacctatcgagccgttcgtgaagtttaaacaagccga 111  Q
    |||||||  |||| |||||||||||||||| || ||||||||||| |||||||| |||||    
T  13164621 gaattatgagaatcgagctaatgaacctattgatccgttcgtgaattttaaacatgccga 13164680  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 27195495 - 27195428
Alignment:
Q  106 agccgaaccatttcttattgagt-----cgagctcagacatcggttcgactcgactcatttccaacccta 170  Q
    |||||||||| ||||||||||||     |||||||||||||  ||||||||||||||||||||| |||||    
T  27195495 agccgaaccaattcttattgagtcgagtcgagctcagacat--gttcgactcgactcatttccagcccta 27195428  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 106 - 170
Target Start/End: Complemental strand, 44377677 - 44377615
Alignment:
Q  106 agccgaaccatttcttattgagtcgagctcagacatcggttcgactcgactcatttccaacccta 170  Q
    |||||||||| ||||||| ||||||||||||||||  |||||||||||||||||||||| |||||    
T  44377677 agccgaaccaattcttatcgagtcgagctcagaca--ggttcgactcgactcatttccagcccta 44377615  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 88 - 170
Target Start/End: Complemental strand, 38791152 - 38791072
Alignment:
Q  88 gttcgtgaagtttaaacaagccgaaccatttcttattgagtcgagctcagacatcggttcgactcgactcatttccaacccta 170  Q
    ||||||||| ||||||| ||| |||||| || |||| |||||||||||| ||||  |||||||||||||||||| || |||||    
T  38791152 gttcgtgaactttaaacgagctgaaccaatttttatcgagtcgagctcaaacat--gttcgactcgactcattttcagcccta 38791072  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 123 - 172
Target Start/End: Original strand, 46945265 - 46945312
Alignment:
Q  123 ttgagtcgagctcagacatcggttcgactcgactcatttccaaccctact 172  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  46945265 ttgagtcgagctcagaca--ggttcgactcgactcatttccaaccttact 46945312  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 50711509 - 50711574
Alignment:
Q  106 agccgaaccatttcttattgagtcgagctcagacatcggttcgactcgactcatttccaaccctactt 173  Q
    |||||||||| ||||||| ||||||||||||||||  | |||||||||||| |||||||  |||||||    
T  50711509 agccgaaccaattcttatcgagtcgagctcagaca--gattcgactcgacttatttccagtcctactt 50711574  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 170
Target Start/End: Original strand, 16743187 - 16743249
Alignment:
Q  106 agccgaaccatttcttattgagtcgagctcagacatcggttcgactcgactcatttccaacccta 170  Q
    |||||||||| ||||||| ||||||||||||||||   |||||||| ||| |||||||| |||||    
T  16743187 agccgaaccaattcttatcgagtcgagctcagaca--agttcgacttgacacatttccagcccta 16743249  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 170
Target Start/End: Complemental strand, 21436336 - 21436307
Alignment:
Q  141 tcggttcgactcgactcatttccaacccta 170  Q
    ||||||||||||||||||||||||||||||    
T  21436336 tcggttcgactcgactcatttccaacccta 21436307  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 170
Target Start/End: Complemental strand, 53369091 - 53369062
Alignment:
Q  141 tcggttcgactcgactcatttccaacccta 170  Q
    ||||||||||||||||||||||||||||||    
T  53369091 tcggttcgactcgactcatttccaacccta 53369062  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 176
Target Start/End: Complemental strand, 19850176 - 19850126
Alignment:
Q  129 cgagctcagaca---tcggttcgactcgactcatttccaaccctacttggg 176  Q
    ||||||||||||   |||||||||||||||||||||||| |||||| ||||    
T  19850176 cgagctcagacaggttcggttcgactcgactcatttccagccctacgtggg 19850126  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 44595894 - 44595835
Alignment:
Q  108 ccgaaccatttcttattgagtcgagctcagaca---tcggttcgactcgactcatttcca 164  Q
    |||||||| ||||||| ||||||||||||||||   ||||||||||||||||||||||||    
T  44595894 ccgaaccaattcttatcgagtcgagctcagacaggttcggttcgactcgactcatttcca 44595835  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 109 - 175
Target Start/End: Original strand, 40160357 - 40160421
Alignment:
Q  109 cgaaccatttcttattgagtcgagctcagacatcggttcgactcgactcatttccaaccctacttgg 175  Q
    ||||||| ||||||| ||||||||||||||||    ||||||||||||||||| || ||||||||||    
T  40160357 cgaaccaattcttatcgagtcgagctcagaca--aattcgactcgactcattttcagccctacttgg 40160421  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 37441929 - 37441962
Alignment:
Q  141 tcggttcgactcgactcatttccaaccctacttg 174  Q
    |||||||||||||||||||||||| |||||||||    
T  37441929 tcggttcgactcgactcatttccagccctacttg 37441962  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 106 - 164
Target Start/End: Complemental strand, 36471876 - 36471820
Alignment:
Q  106 agccgaaccatttcttattgagtcgagctcagacatcggttcgactcgactcatttcca 164  Q
    ||||||| || ||||||| ||||||||||||||||  ||||||||||||||||||||||    
T  36471876 agccgaatcaattcttatcgagtcgagctcagaca--ggttcgactcgactcatttcca 36471820  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 106 - 173
Target Start/End: Complemental strand, 26719226 - 26719156
Alignment:
Q  106 agccgaaccatttcttattgagtcgagctcagaca---tcggttcgactcgactcatttccaaccctactt 173  Q
    |||||||||| ||||||| ||||||||||||||||   |||  |||||||||||||| |||| ||||||||    
T  26719226 agccgaaccaattcttatcgagtcgagctcagacagattcgactcgactcgactcatgtccagccctactt 26719156  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 172
Target Start/End: Complemental strand, 37333726 - 37333695
Alignment:
Q  141 tcggttcgactcgactcatttccaaccctact 172  Q
    ||||||||||||||||||||||||||||||||    
T  37333726 tcggttcgactcgactcatttccaaccctact 37333695  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 7443873 - 7443829
Alignment:
Q  129 cgagctcagaca---tcggttcgactcgactcatttccaacccta 170  Q
    ||||||||||||   ||||||||||||||||||||||||||||||    
T  7443873 cgagctcagacagattcggttcgactcgactcatttccaacccta 7443829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0746 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0746
Description:

Target: scaffold0746; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 5356 - 5426
Alignment:
Q  108 ccgaaccatttcttattgagtcgagctcagaca---tcggttcgactcgactcatttccaaccctacttgg 175  Q
    |||||||| ||||||| || |||||||||||||   | |||||||||||||||||||||||| ||| ||||    
T  5356 ccgaaccaattcttatcgaatcgagctcagacagatttggttcgactcgactcatttccaacactagttgg 5426  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 129 - 170
Target Start/End: Complemental strand, 33830934 - 33830890
Alignment:
Q  129 cgagctcagaca---tcggttcgactcgactcatttccaacccta 170  Q
    ||||||||||||   ||||||||||||||||||||||||||||||    
T  33830934 cgagctcagacaggttcggttcgactcgactcatttccaacccta 33830890  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 40675237 - 40675183
Alignment:
Q  106 agccgaaccatttcttattgagtcgagctcagacatcggttcgactcgactcatttc 162  Q
    |||||||||| ||||||| || |||||||||||||   |||||||||||||||||||    
T  40675237 agccgaaccaattcttatcgaatcgagctcagaca--agttcgactcgactcatttc 40675183  T

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Target: scaffold0043 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 123 - 170
Target Start/End: Complemental strand, 16542 - 16492
Alignment:
Q  123 ttgagtcgagctcagaca---tcggttcgactcgactcatttccaacccta 170  Q
    ||||||||||||||||||   ||| |||||||||||||||||||| |||||    
T  16542 ttgagtcgagctcagacaggttcgattcgactcgactcatttccagcccta 16492  T

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